Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   BBB39_RS11855 Genome accession   NZ_CP016340
Coordinates   2554579..2556081 (-) Length   500 a.a.
NCBI ID   WP_033534865.1    Uniprot ID   A0A157R2Q9
Organism   Bordetella trematum strain F581     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2549579..2561081
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBB39_RS11830 (BBB39_11710) - 2549724..2550062 (-) 339 WP_033534916.1 integration host factor subunit alpha -
  BBB39_RS11835 (BBB39_11715) pheT 2550076..2552493 (-) 2418 WP_025514711.1 phenylalanine--tRNA ligase subunit beta -
  BBB39_RS11840 (BBB39_11720) pheS 2552506..2553528 (-) 1023 WP_025514710.1 phenylalanine--tRNA ligase subunit alpha -
  BBB39_RS11845 (BBB39_11725) rplT 2553602..2553961 (-) 360 WP_025514708.1 50S ribosomal protein L20 -
  BBB39_RS11850 (BBB39_11730) rpmI 2553977..2554174 (-) 198 WP_025514706.1 50S ribosomal protein L35 -
  BBB39_RS11855 (BBB39_11735) comM 2554579..2556081 (-) 1503 WP_033534865.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  BBB39_RS11860 (BBB39_11740) - 2556192..2557778 (-) 1587 WP_063492349.1 sulfatase -
  BBB39_RS11865 (BBB39_11745) - 2557775..2558734 (-) 960 WP_025514700.1 Bug family tripartite tricarboxylate transporter substrate binding protein -
  BBB39_RS11870 (BBB39_11750) - 2558846..2559784 (+) 939 WP_063492635.1 LysR family transcriptional regulator -
  BBB39_RS21290 - 2559900..2560003 (-) 104 Protein_2350 antibiotic acetyltransferase -
  BBB39_RS11880 (BBB39_11760) - 2560022..2560843 (-) 822 WP_033534866.1 IclR family transcriptional regulator -

Sequence

Protein


Download         Length: 500 a.a.        Molecular weight: 51929.02 Da        Isoelectric Point: 8.9927

>NTDB_id=187039 BBB39_RS11855 WP_033534865.1 2554579..2556081(-) (comM) [Bordetella trematum strain F581]
MTLAVLSSCTLAGLQTHAVRVEAHLGAGLPLFTVVGLPDVEVRESRERVRAAIVNSGFAFPSGRVTINLSPADLPKASSR
FDLPIAAGILLASGQIVAPSEEGACLVLAGELSLSGELVPVADPLAIALGVARADAGARLLLPAASAAEAARVPGLLVYA
ATNLAQVAAHLAGRESLPQATPLPRPEAQALPCLADVRGQPGARRALEIAAAGGHSLLMCGPPGAGKSMLAQRLPGLLPP
LPDLAALEVAAIARLAGVAAAPFGQAPFRAPHHGATPAALIGGGSPPRPGEISLAHQGILFLDELPEFERRALQALREPL
EAGEVALARASAHVRFPARFQLVAAMNPCPCGWRGHPGRPCRCRPEQIERYVARLGGPLRDRIDLHLWLPPVAPERLGEA
PGEPSAVVRERVQACRARQMARQGQLNARLQGADLLRHAGPDAAASRWFAQALRRLGASARAAHRLLRVARSIADLAGEP
GVAQAHLAEALQYRDTGGEG

Nucleotide


Download         Length: 1503 bp        

>NTDB_id=187039 BBB39_RS11855 WP_033534865.1 2554579..2556081(-) (comM) [Bordetella trematum strain F581]
ATGACGCTTGCCGTGCTGTCGAGTTGCACCCTGGCCGGTTTGCAGACCCATGCCGTGCGGGTCGAGGCGCACCTGGGGGC
GGGCTTGCCGCTATTCACCGTGGTGGGCCTGCCCGACGTCGAAGTCCGCGAGAGCCGGGAGCGGGTGCGCGCTGCCATCG
TCAATAGCGGCTTCGCATTTCCGTCCGGGCGCGTCACCATCAATCTGTCGCCGGCCGATTTGCCTAAGGCCTCATCGCGA
TTCGATCTGCCCATTGCCGCCGGCATCCTGCTGGCATCCGGGCAGATCGTCGCGCCGTCGGAAGAGGGCGCTTGCCTGGT
GCTGGCCGGCGAGCTCTCCCTGTCGGGTGAACTGGTGCCGGTGGCCGATCCGCTGGCGATCGCGCTGGGCGTGGCGCGTG
CCGATGCGGGCGCGCGCCTGCTGCTGCCGGCGGCCAGCGCGGCCGAGGCGGCGCGCGTGCCGGGCTTGCTGGTGTATGCC
GCCACCAATCTGGCGCAGGTGGCGGCCCATCTGGCCGGGCGCGAAAGCCTGCCGCAGGCAACCCCTTTGCCCCGGCCTGA
GGCCCAGGCGCTGCCTTGTCTGGCGGATGTGCGCGGCCAGCCGGGCGCGCGGCGGGCGCTGGAGATTGCCGCGGCCGGCG
GGCACAGTCTGCTGATGTGCGGCCCGCCCGGCGCAGGGAAAAGCATGCTGGCGCAGCGTCTGCCGGGCTTGCTGCCGCCG
CTGCCGGATCTGGCCGCGCTCGAGGTGGCCGCGATCGCCCGGTTGGCCGGCGTGGCCGCAGCGCCTTTCGGGCAGGCGCC
GTTTCGCGCGCCTCATCACGGGGCCACGCCGGCCGCATTGATCGGCGGCGGCTCGCCGCCCCGGCCCGGCGAGATCTCCC
TGGCGCATCAAGGCATCCTGTTCCTCGATGAGCTGCCCGAGTTCGAGCGTCGCGCCCTGCAGGCCCTGCGCGAGCCGCTG
GAGGCCGGCGAGGTGGCGTTGGCGCGGGCCTCGGCGCATGTGCGGTTCCCGGCGCGGTTTCAGCTGGTGGCGGCGATGAA
CCCCTGCCCTTGCGGCTGGCGCGGCCATCCCGGGCGGCCCTGCCGTTGCCGGCCCGAACAGATCGAGCGCTATGTCGCGC
GGCTGGGTGGGCCCCTGCGCGACCGCATCGACCTGCATCTGTGGCTGCCGCCGGTGGCGCCCGAGCGCCTGGGCGAAGCG
CCGGGCGAGCCTTCGGCGGTGGTGCGCGAACGGGTGCAGGCCTGCCGTGCCCGGCAAATGGCGCGCCAGGGTCAACTCAA
TGCCCGTCTGCAGGGGGCCGATCTGCTGCGTCACGCCGGCCCGGATGCGGCCGCCAGTCGCTGGTTCGCCCAGGCGTTGC
GGCGTCTGGGGGCCTCGGCGCGGGCGGCCCACCGGCTCTTGCGGGTGGCGCGCAGCATTGCCGACCTGGCGGGCGAGCCC
GGGGTGGCGCAGGCGCATCTGGCCGAGGCATTGCAGTACCGCGATACGGGCGGCGAGGGTTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-394)

Subunit ChlI of Mg-chelatase (ChlI)

(21-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A157R2Q9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

48.4

100

0.484
  comM Vibrio campbellii strain DS40M4

47.495

99.8

0.474
  comM Haemophilus influenzae Rd KW20

46.825

100

0.472
  comM Glaesserella parasuis strain SC1401

46.123

100

0.464
  comM Legionella pneumophila str. Paris

44.862

100

0.454
  comM Legionella pneumophila strain ERS1305867

44.862

100

0.454
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

40.945

100

0.416

Multiple sequence alignment