Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | BBB50_RS05130 | Genome accession | NZ_CP016324 |
| Coordinates | 1050514..1050825 (+) | Length | 103 a.a. |
| NCBI ID | WP_001166105.1 | Uniprot ID | Q9KQT1 |
| Organism | Vibrio cholerae 2740-80 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1045514..1055825
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BBB50_RS05115 (BBB50_05115) | lon | 1045551..1047911 (+) | 2361 | WP_001047611.1 | endopeptidase La | - |
| BBB50_RS05120 (BBB50_05120) | - | 1048095..1048367 (+) | 273 | WP_001044516.1 | HU family DNA-binding protein | - |
| BBB50_RS05125 (BBB50_05125) | ppiD | 1048520..1050379 (+) | 1860 | WP_000969331.1 | peptidylprolyl isomerase | - |
| BBB50_RS05130 (BBB50_05130) | comEA | 1050514..1050825 (+) | 312 | WP_001166105.1 | ComEA family DNA-binding protein | Machinery gene |
| BBB50_RS05135 (BBB50_05135) | cmk | 1051008..1051685 (+) | 678 | WP_000094752.1 | (d)CMP kinase | - |
| BBB50_RS05140 (BBB50_05140) | rpsA | 1051794..1053464 (+) | 1671 | WP_000140318.1 | 30S ribosomal protein S1 | - |
| BBB50_RS05145 (BBB50_05145) | ihfB | 1053752..1054030 (+) | 279 | WP_000167341.1 | integration host factor subunit beta | - |
| BBB50_RS05150 (BBB50_05150) | - | 1054169..1054450 (+) | 282 | WP_000691492.1 | LapA family protein | - |
| BBB50_RS05155 (BBB50_05155) | lapB | 1054462..1055631 (+) | 1170 | WP_000889971.1 | lipopolysaccharide assembly protein LapB | - |
Sequence
Protein
Download Length: 103 a.a. Molecular weight: 10966.78 Da Isoelectric Point: 5.0506
>NTDB_id=186925 BBB50_RS05130 WP_001166105.1 1050514..1050825(+) (comEA) [Vibrio cholerae 2740-80]
MQIKTKIVTLFLSLCLPTLPLLANAEETAPAAQVEEGIVITVNINTASAEELATLLKGIGLKKAQAIVDYREANGPFTHI
DDLTNVKGIGEATVRNNAARILL
MQIKTKIVTLFLSLCLPTLPLLANAEETAPAAQVEEGIVITVNINTASAEELATLLKGIGLKKAQAIVDYREANGPFTHI
DDLTNVKGIGEATVRNNAARILL
Nucleotide
Download Length: 312 bp
>NTDB_id=186925 BBB50_RS05130 WP_001166105.1 1050514..1050825(+) (comEA) [Vibrio cholerae 2740-80]
ATGCAAATCAAAACCAAAATAGTGACACTGTTTCTTTCTCTCTGCCTGCCGACATTACCGTTACTGGCCAATGCCGAGGA
AACGGCACCCGCTGCGCAGGTAGAAGAAGGTATTGTGATCACTGTCAATATTAATACCGCTTCTGCAGAAGAGCTGGCGA
CGTTACTCAAAGGCATCGGGCTTAAGAAAGCTCAGGCCATTGTCGATTATCGAGAAGCCAACGGTCCTTTTACTCATATC
GATGATCTGACGAATGTGAAAGGGATTGGTGAAGCGACAGTGCGCAACAATGCCGCAAGGATCTTGTTATAA
ATGCAAATCAAAACCAAAATAGTGACACTGTTTCTTTCTCTCTGCCTGCCGACATTACCGTTACTGGCCAATGCCGAGGA
AACGGCACCCGCTGCGCAGGTAGAAGAAGGTATTGTGATCACTGTCAATATTAATACCGCTTCTGCAGAAGAGCTGGCGA
CGTTACTCAAAGGCATCGGGCTTAAGAAAGCTCAGGCCATTGTCGATTATCGAGAAGCCAACGGTCCTTTTACTCATATC
GATGATCTGACGAATGTGAAAGGGATTGGTGAAGCGACAGTGCGCAACAATGCCGCAAGGATCTTGTTATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Vibrio cholerae C6706 |
100 |
100 |
1 |
| comEA | Vibrio cholerae strain A1552 |
100 |
100 |
1 |
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
62.766 |
91.262 |
0.573 |
| comEA | Vibrio campbellii strain DS40M4 |
58.333 |
93.204 |
0.544 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
40.541 |
100 |
0.437 |