Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   A0O31_RS04105 Genome accession   NZ_CP016312
Coordinates   791998..793485 (+) Length   495 a.a.
NCBI ID   WP_071676790.1    Uniprot ID   A0A1J0LU83
Organism   Thermus brockianus strain GE-1     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 786998..798485
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A0O31_RS04080 (A0O31_00842) - 787182..788309 (-) 1128 WP_071676785.1 NAD(P) transhydrogenase subunit alpha -
  A0O31_RS04085 (A0O31_00843) - 788484..789371 (+) 888 WP_071676786.1 DMT family transporter -
  A0O31_RS04090 (A0O31_00844) - 789368..790180 (+) 813 WP_071676787.1 DMT family transporter -
  A0O31_RS04095 (A0O31_00845) - 790182..791330 (+) 1149 WP_071676788.1 MFS transporter -
  A0O31_RS04100 (A0O31_00846) - 791434..791886 (+) 453 WP_071676789.1 hypothetical protein -
  A0O31_RS04105 (A0O31_00847) comM 791998..793485 (+) 1488 WP_071676790.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  A0O31_RS04110 - 793493..793666 (+) 174 WP_152024394.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein -
  A0O31_RS04115 (A0O31_00848) mgsA 793810..794208 (-) 399 WP_071676791.1 methylglyoxal synthase -
  A0O31_RS04120 (A0O31_00849) - 794231..794551 (+) 321 WP_071677914.1 nucleotide pyrophosphohydrolase -
  A0O31_RS04125 (A0O31_00850) - 794548..795132 (+) 585 WP_071676792.1 MBL fold metallo-hydrolase -
  A0O31_RS04130 (A0O31_00851) - 795137..796039 (+) 903 WP_071676793.1 ABC transporter ATP-binding protein -
  A0O31_RS04135 (A0O31_00852) - 796032..796784 (+) 753 WP_071676794.1 ABC transporter -
  A0O31_RS04140 (A0O31_00853) - 796774..797844 (+) 1071 WP_071676795.1 YbfB/YjiJ family MFS transporter -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 52620.88 Da        Isoelectric Point: 8.4668

>NTDB_id=186783 A0O31_RS04105 WP_071676790.1 791998..793485(+) (comM) [Thermus brockianus strain GE-1]
MLAQVRSYTLFGLDAVPVTVEVDVSPGLPSYALVGLPDKAVEESRERVRAALKNAGFPYPQARVVVNLAPAELRKEGSHF
DLPIALGLLAAQGVVPLEALAGLAVAGELGLDGTLRPVPGAVNLALGALAEGKTLLLPKESAKEAALVEGVVALGAETLA
QAVAHLKGEEALSPAAPEDPVEALEVLDLRDVKGQAKAKRALEIAAAGYHHLLMVGSPGSGKTMLARRLPFLLPPLSREA
ALEVTRIHSAAGKPVKGLLRTPPFRAPHHTVSYAGLIGGGAIPKPGEVSLAHRGVLFLDEFPEFSRDALEALRQPLEDGV
VTVARARASLTFPARFLLVAAMNPCPCGWYGDPERPCSCTPSARQRYAGRISGPLLDRFDLVVEVPRLTPLELARAPEGE
PTAVVRERVLAARERMQARQGKPNSELLGRELRQHAKLSPSSEALLQAATQRLALSARSYDRILRVARTIADLAGSERIE
EAHLAEALTYRRSLG

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=186783 A0O31_RS04105 WP_071676790.1 791998..793485(+) (comM) [Thermus brockianus strain GE-1]
ATGCTAGCCCAGGTGCGAAGCTACACCCTCTTCGGCCTGGACGCGGTTCCCGTGACCGTGGAGGTGGATGTTAGCCCCGG
GCTTCCCTCCTACGCCCTGGTGGGCCTTCCGGACAAGGCGGTGGAGGAAAGCCGGGAAAGGGTCCGGGCCGCCCTGAAAA
ACGCGGGCTTCCCCTACCCCCAGGCCCGGGTGGTGGTGAACCTGGCCCCGGCGGAGCTCAGGAAGGAGGGGAGCCACTTT
GACCTCCCCATCGCCCTGGGGCTTTTGGCGGCGCAAGGGGTGGTGCCCCTCGAGGCCCTGGCGGGCCTCGCCGTGGCGGG
GGAGCTGGGGCTGGACGGGACCCTCCGCCCCGTGCCGGGAGCGGTGAACCTGGCCCTGGGCGCCCTAGCAGAGGGAAAAA
CGCTCCTCCTCCCCAAGGAAAGCGCTAAGGAAGCGGCCCTGGTGGAGGGCGTGGTGGCCCTGGGAGCGGAGACCCTGGCC
CAGGCCGTGGCCCACCTAAAGGGAGAGGAAGCCCTTTCCCCAGCGGCGCCTGAAGACCCCGTGGAGGCCCTAGAGGTCCT
GGACCTGCGGGACGTGAAGGGGCAGGCCAAAGCCAAACGGGCCCTGGAGATCGCCGCCGCCGGGTACCACCACCTCCTCA
TGGTGGGAAGCCCGGGCTCGGGAAAGACCATGCTGGCAAGGCGCCTGCCCTTCCTCCTCCCTCCCCTCTCCCGGGAGGCC
GCCCTCGAGGTCACCCGCATCCACTCCGCCGCCGGCAAGCCCGTCAAGGGCCTCCTCCGCACGCCTCCCTTCCGCGCCCC
CCACCACACGGTGAGCTACGCCGGGCTCATCGGGGGCGGGGCCATCCCCAAGCCGGGGGAGGTTTCCTTGGCCCACCGGG
GCGTGCTCTTTTTGGACGAGTTTCCCGAGTTTTCCCGGGACGCCCTCGAGGCCCTCCGCCAACCCCTGGAGGACGGGGTG
GTCACCGTGGCCCGGGCCCGGGCAAGCCTCACCTTCCCCGCCCGCTTCCTCCTGGTGGCCGCCATGAACCCCTGCCCCTG
CGGCTGGTACGGGGACCCGGAAAGGCCCTGTAGCTGCACCCCCTCGGCCCGGCAACGCTACGCCGGCCGCATCTCCGGAC
CCCTCTTGGACCGCTTTGACCTGGTGGTGGAGGTGCCCCGCCTCACCCCCCTAGAGCTCGCCCGCGCCCCCGAGGGCGAG
CCCACCGCGGTGGTGCGGGAGCGGGTGTTGGCCGCCCGGGAAAGAATGCAGGCCCGCCAAGGCAAGCCCAACAGCGAACT
CCTGGGCCGCGAATTGCGGCAACACGCGAAGCTTTCCCCCTCCTCCGAGGCCCTCTTGCAAGCCGCCACCCAGCGCTTAG
CCCTCAGCGCAAGGAGCTACGACCGCATCCTGCGGGTGGCCCGTACCATCGCCGACCTGGCGGGCTCGGAGCGCATTGAG
GAGGCCCATCTGGCCGAGGCGCTCACCTACCGCAGGAGCCTGGGGTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(20-140)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(188-389)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(399-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1J0LU83

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

48.394

100

0.487
  comM Vibrio cholerae strain A1552

48.479

99.596

0.483
  comM Vibrio campbellii strain DS40M4

48.178

99.798

0.481
  comM Glaesserella parasuis strain SC1401

47.284

100

0.475
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.437

100

0.463
  comM Legionella pneumophila str. Paris

44.578

100

0.448
  comM Legionella pneumophila strain ERS1305867

44.578

100

0.448

Multiple sequence alignment