Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | VSVS12_RS05905 | Genome accession | NZ_CP016307 |
| Coordinates | 1251498..1251812 (+) | Length | 104 a.a. |
| NCBI ID | WP_005595884.1 | Uniprot ID | A0A1B1NMR5 |
| Organism | Vibrio scophthalmi strain VS-12 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1246498..1256812
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| VSVS12_RS05890 (VSVS12_01191) | lon | 1246512..1248863 (+) | 2352 | WP_005595880.1 | endopeptidase La | - |
| VSVS12_RS05895 (VSVS12_01192) | - | 1249045..1249329 (+) | 285 | Protein_1092 | HU family DNA-binding protein | - |
| VSVS12_RS05900 (VSVS12_01193) | ppiD | 1249501..1251360 (+) | 1860 | WP_065430071.1 | peptidylprolyl isomerase | - |
| VSVS12_RS05905 (VSVS12_01194) | comEA | 1251498..1251812 (+) | 315 | WP_005595884.1 | ComEA family DNA-binding protein | Machinery gene |
| VSVS12_RS05910 (VSVS12_01195) | cmk | 1252092..1252772 (+) | 681 | WP_005595886.1 | (d)CMP kinase | - |
| VSVS12_RS05915 (VSVS12_01196) | rpsA | 1252881..1254551 (+) | 1671 | WP_005595887.1 | 30S ribosomal protein S1 | - |
| VSVS12_RS05920 (VSVS12_01197) | ihfB | 1254754..1255035 (+) | 282 | WP_005595888.1 | integration host factor subunit beta | - |
| VSVS12_RS05925 (VSVS12_01198) | - | 1255169..1255447 (+) | 279 | WP_005595889.1 | LapA family protein | - |
| VSVS12_RS05930 (VSVS12_01199) | lapB | 1255473..1256642 (+) | 1170 | WP_009388068.1 | lipopolysaccharide assembly protein LapB | - |
Sequence
Protein
Download Length: 104 a.a. Molecular weight: 11174.85 Da Isoelectric Point: 4.5557
>NTDB_id=186760 VSVS12_RS05905 WP_005595884.1 1251498..1251812(+) (comEA) [Vibrio scophthalmi strain VS-12]
MNIKALVLSVVLTFSLPFTAVLAEQQPDSPPENPKYDGIEIVVNVNQASAQEIADLLKGIGLTKAQAIVDYRDQQGPFKR
IEDLAKVSGVGEATVAKNVGRIEL
MNIKALVLSVVLTFSLPFTAVLAEQQPDSPPENPKYDGIEIVVNVNQASAQEIADLLKGIGLTKAQAIVDYRDQQGPFKR
IEDLAKVSGVGEATVAKNVGRIEL
Nucleotide
Download Length: 315 bp
>NTDB_id=186760 VSVS12_RS05905 WP_005595884.1 1251498..1251812(+) (comEA) [Vibrio scophthalmi strain VS-12]
ATGAATATCAAAGCGCTTGTTCTTTCTGTTGTACTCACTTTTTCGCTTCCTTTTACTGCTGTCTTGGCAGAACAACAACC
AGATTCTCCACCTGAAAACCCAAAATACGATGGCATTGAAATTGTCGTTAACGTTAATCAAGCATCGGCACAAGAAATAG
CGGATTTGCTCAAGGGCATCGGCTTAACTAAAGCACAGGCGATTGTCGATTATCGTGACCAACAAGGGCCATTTAAGCGA
ATTGAAGATCTGGCGAAAGTAAGCGGAGTGGGTGAGGCTACTGTGGCCAAAAATGTTGGCCGGATTGAACTGTAA
ATGAATATCAAAGCGCTTGTTCTTTCTGTTGTACTCACTTTTTCGCTTCCTTTTACTGCTGTCTTGGCAGAACAACAACC
AGATTCTCCACCTGAAAACCCAAAATACGATGGCATTGAAATTGTCGTTAACGTTAATCAAGCATCGGCACAAGAAATAG
CGGATTTGCTCAAGGGCATCGGCTTAACTAAAGCACAGGCGATTGTCGATTATCGTGACCAACAAGGGCCATTTAAGCGA
ATTGAAGATCTGGCGAAAGTAAGCGGAGTGGGTGAGGCTACTGTGGCCAAAAATGTTGGCCGGATTGAACTGTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Vibrio cholerae C6706 |
50.962 |
100 |
0.51 |
| comEA | Vibrio cholerae strain A1552 |
50.962 |
100 |
0.51 |
| comEA | Vibrio campbellii strain DS40M4 |
52.577 |
93.269 |
0.49 |
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
50.505 |
95.192 |
0.481 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
35.455 |
100 |
0.375 |