Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | VSVS12_RS02920 | Genome accession | NZ_CP016307 |
| Coordinates | 609858..610397 (+) | Length | 179 a.a. |
| NCBI ID | WP_005593087.1 | Uniprot ID | F9RB03 |
| Organism | Vibrio scophthalmi strain VS-12 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 604858..615397
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| VSVS12_RS02905 (VSVS12_00582) | uvrA | 604915..607737 (-) | 2823 | WP_065429773.1 | excinuclease ABC subunit UvrA | - |
| VSVS12_RS02910 (VSVS12_00583) | galU | 607921..608793 (-) | 873 | WP_065429774.1 | UTP--glucose-1-phosphate uridylyltransferase GalU | - |
| VSVS12_RS02915 (VSVS12_00584) | qstR | 608912..609559 (-) | 648 | WP_005593085.1 | LuxR C-terminal-related transcriptional regulator | Regulator |
| VSVS12_RS02920 (VSVS12_00585) | ssb | 609858..610397 (+) | 540 | WP_005593087.1 | single-stranded DNA-binding protein | Machinery gene |
| VSVS12_RS02925 (VSVS12_00586) | csrD | 610568..612574 (+) | 2007 | WP_065429775.1 | RNase E specificity factor CsrD | - |
| VSVS12_RS02930 (VSVS12_00587) | - | 612582..614024 (+) | 1443 | WP_065429776.1 | MSHA biogenesis protein MshI | - |
| VSVS12_RS02935 (VSVS12_00588) | - | 614021..614671 (+) | 651 | WP_065429777.1 | type 4a pilus biogenesis protein PilO | - |
| VSVS12_RS02940 (VSVS12_00589) | - | 614679..615002 (+) | 324 | WP_065431056.1 | MSHA biogenesis protein MshK | - |
Sequence
Protein
Download Length: 179 a.a. Molecular weight: 19964.07 Da Isoelectric Point: 5.1976
>NTDB_id=186754 VSVS12_RS02920 WP_005593087.1 609858..610397(+) (ssb) [Vibrio scophthalmi strain VS-12]
MASRGVNKVILVGNLGADPEVRYMPSGGAVANITVATSESWRDKATGEQREKTEWHRVALFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQNQQGQDQYTTEVVVQGFNGVMQMLGGRQGGQGAPMGGQPQQQQQPQQGWGQPQQPAMQQQSHQPQQQQPQ
QQQPQYNEPPMDFDDDIPF
MASRGVNKVILVGNLGADPEVRYMPSGGAVANITVATSESWRDKATGEQREKTEWHRVALFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQNQQGQDQYTTEVVVQGFNGVMQMLGGRQGGQGAPMGGQPQQQQQPQQGWGQPQQPAMQQQSHQPQQQQPQ
QQQPQYNEPPMDFDDDIPF
Nucleotide
Download Length: 540 bp
>NTDB_id=186754 VSVS12_RS02920 WP_005593087.1 609858..610397(+) (ssb) [Vibrio scophthalmi strain VS-12]
ATGGCTAGCCGTGGAGTAAACAAAGTAATCTTGGTCGGTAACTTGGGTGCAGATCCTGAAGTCCGTTACATGCCTAGTGG
CGGTGCAGTAGCAAATATTACTGTGGCTACTTCTGAGTCATGGCGTGATAAAGCTACCGGTGAACAGCGTGAAAAAACAG
AGTGGCACCGTGTTGCTTTGTTTGGAAAATTAGCAGAAGTGGCTGGTGAGTACCTACGCAAAGGCTCTCAAGTTTACATT
GAAGGTCAACTGCAAACGCGTAAATGGCAAAATCAACAAGGCCAAGATCAGTACACAACGGAAGTTGTGGTACAAGGCTT
TAATGGTGTGATGCAAATGCTAGGCGGTCGTCAAGGCGGCCAAGGTGCACCAATGGGTGGTCAACCTCAGCAGCAACAGC
AACCGCAGCAAGGTTGGGGGCAGCCACAACAACCTGCAATGCAGCAGCAATCGCATCAGCCACAACAGCAGCAACCTCAG
CAACAACAGCCTCAATATAATGAGCCACCAATGGATTTTGACGACGACATCCCGTTTTAA
ATGGCTAGCCGTGGAGTAAACAAAGTAATCTTGGTCGGTAACTTGGGTGCAGATCCTGAAGTCCGTTACATGCCTAGTGG
CGGTGCAGTAGCAAATATTACTGTGGCTACTTCTGAGTCATGGCGTGATAAAGCTACCGGTGAACAGCGTGAAAAAACAG
AGTGGCACCGTGTTGCTTTGTTTGGAAAATTAGCAGAAGTGGCTGGTGAGTACCTACGCAAAGGCTCTCAAGTTTACATT
GAAGGTCAACTGCAAACGCGTAAATGGCAAAATCAACAAGGCCAAGATCAGTACACAACGGAAGTTGTGGTACAAGGCTT
TAATGGTGTGATGCAAATGCTAGGCGGTCGTCAAGGCGGCCAAGGTGCACCAATGGGTGGTCAACCTCAGCAGCAACAGC
AACCGCAGCAAGGTTGGGGGCAGCCACAACAACCTGCAATGCAGCAGCAATCGCATCAGCCACAACAGCAGCAACCTCAG
CAACAACAGCCTCAATATAATGAGCCACCAATGGATTTTGACGACGACATCCCGTTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
78.378 |
100 |
0.81 |
| ssb | Glaesserella parasuis strain SC1401 |
53.846 |
100 |
0.547 |
| ssb | Neisseria meningitidis MC58 |
47.191 |
99.441 |
0.469 |
| ssb | Neisseria gonorrhoeae MS11 |
47.191 |
99.441 |
0.469 |