Detailed information
Bioinformatically predicted
Overview
| Name | qstR | Type | Regulator |
| Locus tag | VSVS12_RS02915 | Genome accession | NZ_CP016307 |
| Coordinates | 608912..609559 (-) | Length | 215 a.a. |
| NCBI ID | WP_005593085.1 | Uniprot ID | A0A1B1NL12 |
| Organism | Vibrio scophthalmi strain VS-12 | ||
| Function | promote expression of competence genes (predicted from homology) Competence regulation |
||
Genomic Context
Location: 603912..614559
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| VSVS12_RS02905 (VSVS12_00582) | uvrA | 604915..607737 (-) | 2823 | WP_065429773.1 | excinuclease ABC subunit UvrA | - |
| VSVS12_RS02910 (VSVS12_00583) | galU | 607921..608793 (-) | 873 | WP_065429774.1 | UTP--glucose-1-phosphate uridylyltransferase GalU | - |
| VSVS12_RS02915 (VSVS12_00584) | qstR | 608912..609559 (-) | 648 | WP_005593085.1 | LuxR C-terminal-related transcriptional regulator | Regulator |
| VSVS12_RS02920 (VSVS12_00585) | ssb | 609858..610397 (+) | 540 | WP_005593087.1 | single-stranded DNA-binding protein | Machinery gene |
| VSVS12_RS02925 (VSVS12_00586) | csrD | 610568..612574 (+) | 2007 | WP_065429775.1 | RNase E specificity factor CsrD | - |
| VSVS12_RS02930 (VSVS12_00587) | - | 612582..614024 (+) | 1443 | WP_065429776.1 | MSHA biogenesis protein MshI | - |
Sequence
Protein
Download Length: 215 a.a. Molecular weight: 25017.80 Da Isoelectric Point: 9.2851
>NTDB_id=186753 VSVS12_RS02915 WP_005593085.1 608912..609559(-) (qstR) [Vibrio scophthalmi strain VS-12]
MAKNIYTRTIYFLCENKHAHYPIVDRIEATLGLPIPRMEPQDCMLAMQQHKHKILLIDHNNYQTLNSTIRNLPLSNKIFE
TIIFNVERRLTTDELLSFGNLKALFYRNDDLNDVAFGCGEVINSHNWLPRKVAAQLLHYYRHIFDSQTSPATVDLTTREI
QILRSLKTGASNNQIAEDLFISEFTVKSHLYQIFKKLSVKNRVQATSWAKQHLMS
MAKNIYTRTIYFLCENKHAHYPIVDRIEATLGLPIPRMEPQDCMLAMQQHKHKILLIDHNNYQTLNSTIRNLPLSNKIFE
TIIFNVERRLTTDELLSFGNLKALFYRNDDLNDVAFGCGEVINSHNWLPRKVAAQLLHYYRHIFDSQTSPATVDLTTREI
QILRSLKTGASNNQIAEDLFISEFTVKSHLYQIFKKLSVKNRVQATSWAKQHLMS
Nucleotide
Download Length: 648 bp
>NTDB_id=186753 VSVS12_RS02915 WP_005593085.1 608912..609559(-) (qstR) [Vibrio scophthalmi strain VS-12]
ATGGCTAAGAACATCTACACTAGAACCATCTATTTCCTATGTGAAAATAAACACGCTCACTATCCAATTGTAGATCGTAT
TGAAGCAACCCTCGGCTTACCAATACCGCGAATGGAACCGCAAGACTGTATGCTAGCCATGCAGCAACACAAACATAAAA
TTCTACTGATCGACCATAACAACTACCAGACGTTAAATAGCACTATTCGCAACCTGCCGTTATCGAATAAAATATTTGAA
ACGATTATTTTTAATGTCGAGAGACGCCTCACGACTGACGAGCTACTTAGCTTTGGCAATTTAAAAGCGCTTTTTTATCG
CAACGATGACCTCAATGACGTTGCATTTGGCTGTGGTGAAGTGATCAATAGCCATAATTGGCTGCCAAGAAAAGTCGCCG
CACAACTATTACATTACTATCGCCATATCTTTGATAGCCAAACTTCACCAGCCACCGTTGACCTAACCACCCGTGAGATC
CAGATTTTACGCAGTTTAAAAACTGGCGCGTCAAATAATCAAATTGCAGAAGACCTCTTTATTAGTGAATTTACCGTCAA
GTCCCACCTATACCAAATATTCAAAAAACTCTCAGTAAAGAACCGAGTGCAGGCAACTTCTTGGGCAAAACAGCACTTAA
TGTCTTAA
ATGGCTAAGAACATCTACACTAGAACCATCTATTTCCTATGTGAAAATAAACACGCTCACTATCCAATTGTAGATCGTAT
TGAAGCAACCCTCGGCTTACCAATACCGCGAATGGAACCGCAAGACTGTATGCTAGCCATGCAGCAACACAAACATAAAA
TTCTACTGATCGACCATAACAACTACCAGACGTTAAATAGCACTATTCGCAACCTGCCGTTATCGAATAAAATATTTGAA
ACGATTATTTTTAATGTCGAGAGACGCCTCACGACTGACGAGCTACTTAGCTTTGGCAATTTAAAAGCGCTTTTTTATCG
CAACGATGACCTCAATGACGTTGCATTTGGCTGTGGTGAAGTGATCAATAGCCATAATTGGCTGCCAAGAAAAGTCGCCG
CACAACTATTACATTACTATCGCCATATCTTTGATAGCCAAACTTCACCAGCCACCGTTGACCTAACCACCCGTGAGATC
CAGATTTTACGCAGTTTAAAAACTGGCGCGTCAAATAATCAAATTGCAGAAGACCTCTTTATTAGTGAATTTACCGTCAA
GTCCCACCTATACCAAATATTCAAAAAACTCTCAGTAAAGAACCGAGTGCAGGCAACTTCTTGGGCAAAACAGCACTTAA
TGTCTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| qstR | Vibrio cholerae strain A1552 |
56.542 |
99.535 |
0.563 |
| qstR | Vibrio campbellii strain DS40M4 |
54.419 |
100 |
0.544 |
| qstR | Vibrio parahaemolyticus RIMD 2210633 |
53.488 |
100 |
0.535 |