Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   BAY15_RS17940 Genome accession   NZ_CP016294
Coordinates   4030621..4032123 (+) Length   500 a.a.
NCBI ID   WP_068854333.1    Uniprot ID   -
Organism   Stenotrophomonas rhizophila strain QL-P4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4025621..4037123
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAY15_RS17915 (BAY15_3513) speE 4026882..4027736 (+) 855 WP_068854328.1 polyamine aminopropyltransferase -
  BAY15_RS17920 (BAY15_3514) - 4027824..4028729 (-) 906 WP_068854329.1 aspartyl/asparaginyl beta-hydroxylase domain-containing protein -
  BAY15_RS17925 (BAY15_3515) - 4029186..4029833 (+) 648 WP_068854330.1 RIO1 family regulatory kinase/ATPase -
  BAY15_RS17930 (BAY15_3516) - 4029830..4030168 (-) 339 WP_068854331.1 P-II family nitrogen regulator -
  BAY15_RS17935 (BAY15_3517) - 4030340..4030609 (+) 270 WP_068854332.1 accessory factor UbiK family protein -
  BAY15_RS17940 (BAY15_3518) comM 4030621..4032123 (+) 1503 WP_068854333.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  BAY15_RS17945 (BAY15_3519) - 4032267..4035014 (-) 2748 WP_167693309.1 TonB-dependent receptor -
  BAY15_RS17950 (BAY15_3520) - 4035251..4035961 (+) 711 WP_068854334.1 basic secretory protein-like protein -
  BAY15_RS17955 (BAY15_3521) yidA 4035922..4036794 (-) 873 WP_068854866.1 sugar-phosphatase -

Sequence

Protein


Download         Length: 500 a.a.        Molecular weight: 53414.97 Da        Isoelectric Point: 7.3261

>NTDB_id=186572 BAY15_RS17940 WP_068854333.1 4030621..4032123(+) (comM) [Stenotrophomonas rhizophila strain QL-P4]
MSLALVHSRARAGVYAPAVRIEVLLSGGLPHTQIVGLPEAAVRESRDRVRAALVCAQFEYPQRRILINLAPADLPKEGGR
FDLAIALGILAASDQIDRQLLANYEFLGELALTGELRGVDGALPAAIAAAELGRTLIVASANGAEAALAQHADVRVARTL
LEVCASLESRSLPRAVPAPVVPLAVPDLRDVRGQQQARRALEVAAAGGHHLLLLGTPGCGKTLLASRLPGILPDASEAEA
LETATIASCSGAGIDTARWRHRPYRAPHHTASAVSLVGGGSYPRPGEISLAHNGVLFLDELPEWSRHTLEVLREPLESGT
VMVARAARTHAFPSRFQLVAAMNPCPCGWAGDRSGRCRCSGDAIQRYRGRISGPLLDRIDLHVVVPRLEPGELRSDAPCG
EDSATVRSRVVTARNVQLERSDKANAQLLPSELDAHCRLDDNDQHLLETDVEQLQLSARSMHRILRVARTVADLASCDKI
TTAHLAEAIGYRQVDRGSAG

Nucleotide


Download         Length: 1503 bp        

>NTDB_id=186572 BAY15_RS17940 WP_068854333.1 4030621..4032123(+) (comM) [Stenotrophomonas rhizophila strain QL-P4]
ATGAGCCTGGCGCTGGTGCACAGCCGTGCCCGCGCCGGCGTCTACGCGCCCGCGGTCCGGATCGAAGTCCTCCTCTCCGG
CGGTTTGCCGCATACCCAGATCGTCGGCCTGCCCGAAGCGGCGGTGCGCGAGTCGCGCGACCGGGTGCGCGCCGCGCTGG
TCTGTGCCCAGTTCGAATACCCGCAGCGGCGCATCCTGATCAACCTGGCCCCGGCTGACCTGCCCAAGGAAGGCGGTCGC
TTCGACCTCGCCATCGCGCTGGGCATTCTTGCGGCCAGCGACCAGATCGACCGACAGCTGCTGGCCAACTATGAATTCCT
GGGCGAGCTCGCCCTGACCGGGGAGCTGCGTGGCGTGGACGGTGCACTGCCCGCGGCCATCGCGGCAGCGGAGCTGGGCC
GGACGCTGATTGTCGCCAGCGCCAATGGCGCAGAGGCCGCGCTCGCCCAGCATGCGGATGTCCGCGTAGCCCGTACCTTG
TTGGAGGTGTGCGCCTCGCTGGAAAGCCGCTCGCTGCCACGGGCGGTGCCGGCGCCGGTGGTGCCGCTGGCGGTGCCCGA
CCTGCGCGACGTGCGTGGCCAGCAGCAGGCGCGCCGCGCACTCGAAGTGGCCGCTGCTGGTGGGCACCACCTGTTGTTGC
TCGGCACACCAGGCTGCGGAAAGACCCTGCTGGCCTCGCGCCTGCCCGGCATCCTGCCCGATGCCAGCGAAGCCGAAGCG
CTGGAAACGGCCACCATCGCCTCGTGCAGTGGGGCTGGCATCGACACCGCCCGCTGGCGTCACCGCCCCTACCGCGCGCC
CCACCACACCGCCAGCGCCGTGTCGCTGGTCGGCGGCGGCTCGTATCCCCGGCCCGGTGAGATCTCGCTGGCGCACAACG
GCGTGCTGTTTCTGGATGAGCTTCCCGAATGGAGCCGGCACACCCTCGAAGTGCTACGCGAACCGCTGGAATCGGGAACG
GTCATGGTGGCCCGCGCCGCACGCACCCACGCCTTCCCCTCACGCTTCCAGCTGGTGGCGGCAATGAACCCCTGCCCGTG
TGGCTGGGCCGGCGACCGCAGCGGTCGCTGCCGCTGCAGCGGCGATGCCATCCAGCGCTATCGCGGGCGCATTTCCGGCC
CGCTGCTGGACCGCATCGACCTGCATGTGGTGGTGCCACGGCTGGAGCCGGGTGAGCTGCGCAGCGATGCACCATGCGGC
GAAGACAGCGCCACGGTACGCAGTCGCGTGGTCACGGCGCGCAACGTCCAGCTCGAGCGCAGCGACAAGGCCAACGCACA
ACTCCTGCCTTCCGAGCTGGATGCGCACTGCCGCCTGGACGACAACGACCAGCACCTGCTGGAAACAGACGTGGAACAGC
TGCAGCTCTCGGCCCGCTCGATGCACCGCATCCTGCGCGTGGCACGCACGGTGGCCGATCTGGCCAGTTGCGACAAGATC
ACCACCGCCCATCTGGCCGAGGCCATCGGATACCGCCAGGTGGATCGGGGCAGCGCGGGCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(187-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

53.707

99.8

0.536
  comM Haemophilus influenzae Rd KW20

52.976

100

0.534
  comM Glaesserella parasuis strain SC1401

52.778

100

0.532
  comM Vibrio campbellii strain DS40M4

53.106

99.8

0.53
  comM Legionella pneumophila str. Paris

49.899

99.4

0.496
  comM Legionella pneumophila strain ERS1305867

49.899

99.4

0.496
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.154

100

0.468

Multiple sequence alignment