Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   BA022_RS15665 Genome accession   NZ_CP016278
Coordinates   3343361..3343906 (-) Length   181 a.a.
NCBI ID   WP_011807147.1    Uniprot ID   -
Organism   Diaphorobacter nitroreducens strain SL-205     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3338361..3348906
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BA022_RS15650 (BA022_15315) - 3339118..3340092 (-) 975 WP_088888058.1 LysR substrate-binding domain-containing protein -
  BA022_RS15655 (BA022_15320) mnmA 3340242..3341354 (+) 1113 WP_088888059.1 tRNA 2-thiouridine(34) synthase MnmA -
  BA022_RS15660 (BA022_15325) - 3341592..3343253 (+) 1662 WP_088888060.1 L-lactate permease -
  BA022_RS15665 (BA022_15330) ssb 3343361..3343906 (-) 546 WP_011807147.1 single-stranded DNA-binding protein Machinery gene
  BA022_RS15670 (BA022_15335) - 3344041..3345222 (-) 1182 WP_088888644.1 MFS transporter -
  BA022_RS15675 (BA022_15340) uvrA 3345512..3348601 (+) 3090 WP_088888061.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 19399.38 Da        Isoelectric Point: 5.9554

>NTDB_id=186506 BA022_RS15665 WP_011807147.1 3343361..3343906(-) (ssb) [Diaphorobacter nitroreducens strain SL-205]
MASVNKVIIVGNLGRDPEMRTFPSGDQVANVRIATTDRWRDKNTGENKEATEWHSVVFNGRLAEIVGQYLRKGSQVYVEG
SLRTRKWTDQSGQERYTTEIRADTMQMLGSRQGMGGGQGGGYDDSGYGDNGGGGGGGYEAPRRAAPAPRPAPPAARPAPA
PVAQPPRAASGFDDMDDDIPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=186506 BA022_RS15665 WP_011807147.1 3343361..3343906(-) (ssb) [Diaphorobacter nitroreducens strain SL-205]
ATGGCATCCGTGAACAAAGTCATCATCGTCGGCAACCTGGGGCGCGACCCCGAGATGCGCACCTTCCCCAGCGGCGACCA
GGTCGCCAACGTGCGCATCGCCACGACGGACCGCTGGCGCGACAAGAACACCGGCGAGAACAAGGAAGCCACCGAATGGC
ACAGCGTGGTCTTCAACGGCCGCCTGGCCGAGATCGTGGGCCAGTACCTGCGCAAGGGCTCCCAGGTCTACGTGGAAGGC
AGCCTGCGCACCCGCAAATGGACCGACCAGAGCGGCCAGGAGCGCTACACCACCGAAATCCGCGCCGACACCATGCAGAT
GCTGGGCAGCCGCCAGGGCATGGGCGGCGGCCAGGGCGGCGGCTATGACGACAGCGGCTACGGCGACAACGGCGGCGGCG
GTGGTGGCGGCTACGAGGCCCCGCGCCGCGCCGCACCCGCGCCGCGCCCCGCCCCCCCCGCGGCCCGCCCCGCCCCCGCG
CCCGTGGCACAGCCGCCGCGCGCCGCATCGGGCTTTGACGACATGGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

52.332

100

0.558
  ssb Vibrio cholerae strain A1552

50.802

100

0.525
  ssb Neisseria gonorrhoeae MS11

45.304

100

0.453
  ssb Neisseria meningitidis MC58

42.857

100

0.431

Multiple sequence alignment