Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   BA022_RS14370 Genome accession   NZ_CP016278
Coordinates   3048050..3049588 (+) Length   512 a.a.
NCBI ID   WP_088887902.1    Uniprot ID   -
Organism   Diaphorobacter nitroreducens strain SL-205     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3043050..3054588
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BA022_RS14350 (BA022_14020) - 3044185..3045135 (-) 951 WP_088887899.1 SMP-30/gluconolactonase/LRE family protein -
  BA022_RS14355 (BA022_14025) - 3045267..3046694 (-) 1428 WP_088887900.1 ammonium transporter -
  BA022_RS14360 (BA022_14030) glnK 3046741..3047079 (-) 339 WP_011803632.1 P-II family nitrogen regulator -
  BA022_RS14365 (BA022_14035) - 3047100..3047831 (-) 732 WP_088887901.1 TorF family putative porin -
  BA022_RS14370 (BA022_14040) comM 3048050..3049588 (+) 1539 WP_088887902.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  BA022_RS14375 (BA022_14045) - 3049634..3051367 (+) 1734 WP_088887903.1 methyl-accepting chemotaxis protein -
  BA022_RS14380 (BA022_14050) - 3051496..3052305 (-) 810 WP_088887904.1 SDR family NAD(P)-dependent oxidoreductase -
  BA022_RS14385 (BA022_14055) - 3052414..3053331 (+) 918 WP_187305970.1 LysR family transcriptional regulator -
  BA022_RS14390 (BA022_14060) - 3053362..3054141 (-) 780 WP_228403615.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 512 a.a.        Molecular weight: 53619.40 Da        Isoelectric Point: 7.5529

>NTDB_id=186505 BA022_RS14370 WP_088887902.1 3048050..3049588(+) (comM) [Diaphorobacter nitroreducens strain SL-205]
MSLALVQSRALLGLHAPAVTVEVHLANGLPSFALVGLADVEVKEARERVRSALQNAGLEFPANKKITVNLAPADLPKDSG
RFDLPIALGILAASGQIDAARLDGWEFAGELSLSGLLRPVRGALATSLALRALAQPVRTVLPPGSAEEAALVPGTEIYRA
HHLLDVVRQFVPVPPPNDDGADDGGWQRLQPAPPAPATDGPDLADVKGQAAAKRALEIAAAGGHGLLLVGPPGSGKSMLA
QRFAGLLPPMGVEQALESAAIASLAGRFSPAQWMQRTTASPHHSCSAIALVGGGSPPRPGEISLAHEGVLFLDEFPEFAR
SALEALREPLESGRITIARAAQRAEFPARFQLVAAMNPCPCGFAGSHQRACRCTPDQIARYQGKLSGPLLDRIDLHVEVP
ALPPEELLGAPPGEPSGAVRERVARAHERALQRQGKANQALHGQELEQMAALDAPAARFLQAAAARLAWSARSTHRALKV
ARTIADLSGCETVGAAHVAEAVQYRRALRAPA

Nucleotide


Download         Length: 1539 bp        

>NTDB_id=186505 BA022_RS14370 WP_088887902.1 3048050..3049588(+) (comM) [Diaphorobacter nitroreducens strain SL-205]
ATGAGTCTTGCTTTGGTGCAAAGCCGCGCCCTGCTGGGCCTGCACGCGCCCGCCGTTACTGTGGAAGTACACCTGGCCAA
CGGGTTGCCCAGCTTCGCGCTGGTGGGCCTGGCCGATGTCGAGGTCAAGGAGGCGCGCGAGCGCGTGCGCTCCGCGCTGC
AGAACGCCGGGCTGGAATTCCCGGCCAACAAGAAGATCACCGTGAACCTGGCGCCGGCCGATCTGCCCAAGGACTCCGGC
CGCTTCGACCTGCCGATCGCGCTGGGCATCCTGGCCGCGAGCGGGCAGATCGACGCAGCCCGGTTGGACGGCTGGGAGTT
CGCCGGCGAGCTATCGCTGTCGGGCCTGCTGCGCCCGGTGCGCGGCGCCCTGGCGACCAGCTTGGCGCTGCGCGCGCTGG
CGCAGCCCGTGCGCACGGTGCTTCCCCCCGGCAGCGCCGAAGAAGCTGCGCTGGTGCCGGGCACCGAGATCTACCGCGCG
CACCACCTGTTGGACGTGGTACGCCAGTTCGTGCCCGTGCCCCCGCCGAACGATGATGGCGCGGACGACGGCGGTTGGCA
GCGGCTGCAACCCGCGCCGCCGGCCCCGGCCACCGATGGCCCGGACCTGGCCGACGTGAAGGGGCAGGCCGCGGCCAAGC
GCGCACTGGAGATCGCCGCCGCCGGCGGGCACGGGCTGCTGCTCGTGGGGCCCCCGGGCTCGGGCAAGTCCATGCTGGCC
CAGCGTTTTGCCGGGCTGCTGCCCCCGATGGGGGTGGAGCAAGCGCTGGAGAGCGCGGCCATTGCCAGCCTGGCCGGGCG
CTTCAGCCCCGCACAGTGGATGCAGCGCACCACAGCCAGCCCGCACCACAGCTGCAGCGCGATCGCGCTGGTGGGCGGGG
GCTCGCCGCCGCGCCCGGGCGAGATCTCGCTCGCGCACGAAGGCGTGCTCTTCCTCGATGAATTCCCCGAATTCGCCCGC
AGCGCCCTGGAGGCGCTGCGCGAGCCGCTGGAAAGCGGGCGCATCACCATCGCCCGGGCGGCGCAGCGCGCCGAGTTCCC
GGCGCGCTTTCAGCTCGTGGCGGCCATGAACCCCTGCCCCTGTGGTTTTGCGGGCTCGCACCAGCGCGCCTGCCGCTGCA
CACCCGACCAGATCGCGCGCTACCAGGGCAAGCTCAGCGGCCCGCTGCTGGACCGCATCGACCTGCATGTGGAGGTGCCC
GCGCTGCCGCCCGAGGAACTGCTGGGCGCCCCGCCCGGCGAACCCAGCGGCGCCGTGCGCGAACGCGTGGCCCGCGCGCA
CGAACGAGCGCTCCAGCGCCAGGGCAAGGCCAACCAGGCATTGCATGGCCAGGAGCTGGAACAGATGGCGGCGCTGGACG
CGCCGGCCGCGCGGTTCCTGCAGGCCGCGGCGGCGCGCCTGGCGTGGTCGGCGCGCAGCACGCACCGGGCCCTCAAGGTT
GCACGTACTATTGCCGATCTATCGGGCTGCGAGACCGTGGGCGCCGCCCATGTGGCCGAAGCCGTGCAATACCGGCGCGC
CCTGCGCGCACCGGCGTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(202-406)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(413-505)

Subunit ChlI of Mg-chelatase (ChlI)

(21-132)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

52.148

100

0.521
  comM Haemophilus influenzae Rd KW20

50.769

100

0.516
  comM Vibrio campbellii strain DS40M4

50.685

99.805

0.506
  comM Glaesserella parasuis strain SC1401

50.098

99.414

0.498
  comM Legionella pneumophila str. Paris

48.544

100

0.488
  comM Legionella pneumophila strain ERS1305867

48.544

100

0.488
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.164

100

0.432

Multiple sequence alignment