Detailed information NTG0186474

Bioinformatically predicted

Overview

• Name: radC
• Type: Machinery gene
• Locus tag: A6J72_RS09210
• Genome accession: NZ_CP020433
• Coordinates: 1832695..1833375 (+)
• Length: 226 a.a.
• NCBI ID: WP_003072284.1
• Uniprot ID: T1ZDF0
• Organism: Streptococcus intermedius strain FDAARGOS_233
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1827695..1838375

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
A6J72_RS09185 (A6J72_09155)	pstC	1828477..1829388 (+)	912	WP_003069509.1	phosphate ABC transporter permease subunit PstC	-
A6J72_RS09190 (A6J72_09160)	pstA	1829378..1830262 (+)	885	WP_009568909.1	phosphate ABC transporter permease PstA	-
A6J72_RS09195 (A6J72_09165)	pstB	1830274..1831077 (+)	804	WP_009568908.1	phosphate ABC transporter ATP-binding protein PstB	-
A6J72_RS09200 (A6J72_09170)	pstB	1831117..1831875 (+)	759	WP_003076735.1	phosphate ABC transporter ATP-binding protein PstB	-
A6J72_RS09205 (A6J72_09175)	phoU	1831956..1832609 (+)	654	WP_003076541.1	phosphate signaling complex protein PhoU	-
A6J72_RS09210 (A6J72_09180)	radC	1832695..1833375 (+)	681	WP_003072284.1	DNA repair protein RadC	Machinery gene
A6J72_RS10065 (A6J72_09185)	-	1833372..1834008 (-)	637	Protein_1763	gamma-glutamyl-gamma-aminobutyrate hydrolase family protein	-
A6J72_RS09220 (A6J72_09190)	-	1834027..1834671 (-)	645	WP_003072288.1	redox-sensing transcriptional repressor Rex	-
A6J72_RS09225 (A6J72_09195)	-	1834852..1835199 (-)	348	WP_082312302.1	DUF1831 domain-containing protein	-
A6J72_RS09230 (A6J72_09200)	-	1835204..1836319 (-)	1116	WP_082312303.1	cysteine desulfurase family protein	-
A6J72_RS09235 (A6J72_09205)	-	1836329..1837288 (-)	960	WP_102568070.1	ribose-phosphate diphosphokinase	-
A6J72_RS09240 (A6J72_09210)	-	1837372..1837932 (-)	561	WP_082312305.1	CYTH domain-containing protein	-

Sequence

Protein

• Length: 226 a.a.
• Molecular weight: 25756.79 Da
• Isoelectric Point: 6.9811

>NTDB_id=186474 A6J72_RS09210 WP_003072284.1 1832695..1833375(+) (radC) [Streptococcus intermedius strain FDAARGOS_233]
MYSISFQEDSLLPRERLVAEGAEQLSNQELLSILLRTGNKKETVFQVSQRILSTISSLNELRNMTLQELQSISGIGRIKA
IELQAMVELGQRISKAKLIMQEQILSSQKLAKKMQQELGHKKQEHLVALYLDTQNKIIHQQTIFIGSVSRSIAEPREILH
YAVKHMATSIILVHNHPSGAVLPSKNDDEVTKHVREACELMGFILLDHLIVAEKDYYSYREETELI

Nucleotide

• Length: 681 bp

>NTDB_id=186474 A6J72_RS09210 WP_003072284.1 1832695..1833375(+) (radC) [Streptococcus intermedius strain FDAARGOS_233]
ATGTATAGTATTTCATTTCAGGAAGATTCTTTATTGCCAAGAGAACGTTTGGTAGCAGAAGGTGCAGAACAATTGAGTAA
TCAAGAATTATTATCTATTCTTCTCCGAACAGGTAATAAAAAAGAAACTGTTTTTCAAGTTTCCCAACGAATTTTATCGA
CTATTTCTAGTTTAAATGAGTTACGTAATATGACGCTACAAGAACTACAATCAATCTCTGGAATTGGTCGTATCAAAGCT
ATTGAGTTGCAAGCTATGGTTGAATTAGGGCAACGAATCAGCAAGGCAAAATTGATTATGCAAGAGCAGATTTTAAGTAG
CCAAAAATTAGCGAAAAAAATGCAACAGGAATTAGGACATAAAAAACAGGAACATCTTGTTGCTTTATATCTAGACACTC
AAAATAAAATAATTCATCAACAGACTATTTTTATCGGCAGTGTGTCACGCAGTATAGCAGAACCACGTGAAATTTTGCAC
TATGCTGTGAAACATATGGCGACATCTATTATATTAGTACATAATCATCCCTCAGGAGCAGTACTACCTAGCAAAAACGA
CGATGAAGTCACCAAACATGTAAGAGAAGCATGTGAGCTAATGGGCTTCATCTTGCTGGATCATCTCATCGTCGCTGAGA
AAGATTATTATAGTTATCGAGAAGAAACAGAATTGATTTAA

Domains

Predicted by InterProScan.

• RadC-like JAB domain (RadC) (106-222)

• UPF0758 N-terminal (UPF0758_N) (13-81)

3D structure

• AlphaFold DB: T1ZDF0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radC	Streptococcus gordonii str. Challis substr. CH1	78.319	100	0.783
radC	Streptococcus pneumoniae TIGR4	76.106	100	0.761
radC	Streptococcus pneumoniae R6	75.664	100	0.757
radC	Streptococcus pneumoniae D39	75.664	100	0.757
ysxA/radC	Bacillus subtilis subsp. subtilis str. 168	46.479	94.248	0.438
radC	Haemophilus influenzae Rd KW20	37.788	96.018	0.363