Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   A6J72_RS07650 Genome accession   NZ_CP020433
Coordinates   1524984..1525442 (+) Length   152 a.a.
NCBI ID   WP_082312140.1    Uniprot ID   -
Organism   Streptococcus intermedius strain FDAARGOS_233     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1519984..1530442
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J72_RS07635 (A6J72_07625) scrK 1521983..1522882 (+) 900 WP_003074417.1 fructokinase ScrK -
  A6J72_RS07640 (A6J72_07630) - 1522948..1523358 (+) 411 WP_009569319.1 peptide deformylase -
  A6J72_RS07645 (A6J72_07635) - 1523625..1524812 (+) 1188 WP_009569318.1 NADH-dependent flavin oxidoreductase -
  A6J72_RS07650 (A6J72_07640) rcrR 1524984..1525442 (+) 459 WP_082312140.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  A6J72_RS07655 (A6J72_07645) rcrP 1525435..1527201 (+) 1767 WP_082312141.1 ABC transporter ATP-binding protein Regulator
  A6J72_RS07660 (A6J72_07650) rcrQ 1527191..1528951 (+) 1761 WP_105255943.1 ABC transporter ATP-binding protein Regulator
  A6J72_RS07665 (A6J72_07655) - 1529036..1529449 (+) 414 WP_003075980.1 cupin domain-containing protein -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 17797.73 Da        Isoelectric Point: 9.4029

>NTDB_id=186455 A6J72_RS07650 WP_082312140.1 1524984..1525442(+) (rcrR) [Streptococcus intermedius strain FDAARGOS_233]
MEKPLLEFKRFGRKTHLMIQKIAKERGIEFMAGPQGQVLHFVNHREDYGKMTFIKDIEQELGITKSVASNLMKRMVKNGL
IYLEVSEADKRAKIIRLTSESKERMNKIRDFFDEMDRCLLTGISEEDLVTFFQVMGRFYQNIEKLEKGEANG

Nucleotide


Download         Length: 459 bp        

>NTDB_id=186455 A6J72_RS07650 WP_082312140.1 1524984..1525442(+) (rcrR) [Streptococcus intermedius strain FDAARGOS_233]
ATGGAAAAACCATTATTGGAATTCAAGCGATTTGGACGGAAGACACATCTGATGATTCAAAAAATTGCTAAAGAGCGAGG
GATTGAATTTATGGCGGGTCCACAAGGGCAAGTATTGCATTTTGTGAATCACCGAGAAGATTATGGCAAGATGACCTTTA
TTAAAGATATTGAGCAGGAGTTGGGAATTACCAAGTCAGTTGCTAGTAACTTAATGAAGCGAATGGTTAAAAATGGCCTG
ATTTATTTGGAAGTGAGTGAAGCAGATAAACGCGCTAAGATTATTCGTTTGACATCAGAATCAAAAGAGCGCATGAATAA
AATTCGGGATTTCTTTGATGAGATGGATCGCTGCTTATTGACTGGCATTTCAGAAGAAGATTTGGTGACTTTTTTTCAGG
TAATGGGGCGATTTTACCAGAATATTGAAAAATTAGAAAAAGGAGAAGCGAATGGTTAA

Domains

Predicted by InterProScan.

MarR family (MarR_2)

(33-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

43.151

96.053

0.414

Multiple sequence alignment