Detailed information    

insolico Bioinformatically predicted

Overview


Name   comM   Type   Machinery gene
Locus tag   BA177_RS00910 Genome accession   NZ_CP016268
Coordinates   201465..202976 (+) Length   503 a.a.
NCBI ID   WP_068611914.1    Uniprot ID   A0A193LBR4
Organism   Woeseia oceani strain XK5     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 196465..207976
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BA177_RS00880 (BA177_00880) - 196553..197611 (-) 1059 WP_197493251.1 sensor histidine kinase -
  BA177_RS00885 (BA177_00885) - 197676..198158 (-) 483 WP_068611908.1 DUF4124 domain-containing protein -
  BA177_RS00890 (BA177_00890) - 198499..199710 (-) 1212 WP_068618677.1 ammonium transporter -
  BA177_RS00895 (BA177_00895) - 199815..200153 (-) 339 WP_068611909.1 P-II family nitrogen regulator -
  BA177_RS00900 (BA177_00900) - 200209..200829 (-) 621 WP_068611911.1 TorF family putative porin -
  BA177_RS00905 (BA177_00905) - 201063..201377 (+) 315 WP_068611913.1 accessory factor UbiK family protein -
  BA177_RS00910 (BA177_00910) comM 201465..202976 (+) 1512 WP_068611914.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  BA177_RS00915 (BA177_00915) - 203237..204514 (+) 1278 WP_156762624.1 mechanosensitive ion channel family protein -
  BA177_RS00920 (BA177_00920) - 204570..205655 (-) 1086 WP_068611916.1 NAD-dependent epimerase/dehydratase family protein -
  BA177_RS00925 (BA177_00925) - 205942..206892 (-) 951 WP_068611918.1 hypothetical protein -

Sequence


Protein


Download         Length: 503 a.a.        Molecular weight: 52973.50 Da        Isoelectric Point: 6.9880

>NTDB_id=186410 BA177_RS00910 WP_068611914.1 201465..202976(+) (comM) [Woeseia oceani strain XK5]
MGLALLNSRAQLGVDAPRVTIEVFLSGGLPTFAIVGMPETAVRESKDRVRGAILSSGYHFPQERIIVSLGPADMCKTGGR
FDLAIALGILAASNQINDELMTSHEFFGELSLNGELRRVPGVLPAALRAAEAGQRIVVPGGNAVEAAFASSEVLGAGSLL
EVTAHLSGSRPLTPEPRRSLQAQEPETLDLKDVRGQVQAKRALEIAAAGGHNLLFIGPPGTGKSMLAKRLPGLLPPMSDA
QALATAAVASVLGVATDVQHWCRRPFRAPHHTASAAALVGGGGDPRPGEVSRAHNGVLFLDELPEFHRNVLEVLREPLES
GYITISRAGTQADFPANFQLVAAMNPCPCGYLGDPRGNCNCSADRVQNYRARISGPLLDRIDIQMKVQRPPASCMRADSP
AGESTAEVAARVLAARERQLQRAGLCNADLDGARLAAACNLTDDASALLERAMDQYGLSPRGHQRMQRVALTITDLAGND
GVGVNAIAEALSLRGLEARAVPV

Nucleotide


Download         Length: 1512 bp        

>NTDB_id=186410 BA177_RS00910 WP_068611914.1 201465..202976(+) (comM) [Woeseia oceani strain XK5]
ATGGGCCTGGCGCTCCTGAATAGTCGCGCGCAACTCGGGGTCGATGCGCCGCGGGTCACCATCGAAGTGTTCTTGTCCGG
CGGACTGCCGACGTTTGCCATCGTCGGCATGCCTGAAACCGCGGTACGCGAAAGCAAGGACCGGGTGCGCGGCGCCATTC
TCAGCTCCGGCTATCACTTTCCGCAGGAACGCATCATCGTCAGTCTCGGTCCCGCCGACATGTGCAAGACGGGTGGGCGC
TTCGATCTTGCCATCGCGCTCGGCATTCTCGCGGCCAGCAACCAGATCAACGATGAACTCATGACCAGCCATGAATTCTT
CGGCGAATTGTCGTTGAACGGTGAGTTGCGTCGTGTTCCCGGCGTTTTGCCGGCCGCCTTGCGCGCCGCTGAAGCGGGGC
AGCGGATCGTTGTGCCTGGTGGCAATGCGGTTGAAGCTGCCTTTGCCTCGTCCGAGGTGTTGGGCGCAGGGTCATTGCTG
GAAGTGACGGCGCATCTGTCCGGTTCGCGCCCTCTGACTCCCGAACCACGTCGCTCGTTGCAGGCACAGGAGCCGGAGAC
GCTCGATCTCAAGGACGTTCGTGGCCAGGTGCAGGCAAAACGAGCGCTGGAGATTGCGGCAGCGGGCGGTCACAACCTGT
TGTTCATTGGACCTCCCGGCACTGGCAAGAGCATGTTGGCAAAACGCCTGCCAGGCCTGTTGCCACCGATGTCGGATGCG
CAGGCGCTGGCAACCGCGGCGGTGGCGTCTGTCCTCGGCGTTGCTACCGACGTGCAGCACTGGTGCCGACGGCCATTTCG
GGCGCCGCACCACACCGCGTCGGCAGCGGCGTTGGTCGGTGGTGGCGGCGACCCGCGTCCCGGAGAAGTATCACGCGCGC
ATAACGGGGTGTTGTTTCTCGACGAACTGCCCGAGTTTCATCGCAACGTGCTGGAAGTGCTGCGCGAGCCGCTGGAATCG
GGGTATATCACCATCTCGCGCGCCGGCACGCAGGCGGATTTCCCGGCCAACTTCCAGCTGGTCGCGGCCATGAACCCCTG
CCCCTGTGGCTATCTCGGCGATCCGCGCGGCAACTGCAATTGCAGCGCGGACCGCGTTCAGAACTACCGCGCGCGAATAT
CGGGGCCACTGCTCGATCGCATCGACATACAAATGAAAGTGCAGCGACCGCCCGCTTCCTGCATGCGAGCCGACAGCCCG
GCTGGCGAGTCGACGGCCGAGGTCGCAGCCCGCGTTTTAGCGGCGCGCGAACGGCAGCTGCAACGCGCCGGCTTGTGTAA
CGCTGATCTGGATGGCGCGCGGCTGGCGGCTGCCTGCAATCTCACCGACGACGCCAGTGCTTTGCTCGAACGCGCGATGG
ACCAGTACGGTCTGTCGCCGCGAGGGCATCAACGCATGCAGCGAGTTGCGCTGACCATCACCGATCTCGCCGGCAACGAC
GGCGTGGGCGTGAACGCGATCGCGGAAGCACTCAGCCTGCGCGGCCTGGAGGCCCGGGCAGTTCCGGTCTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A193LBR4

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

51.594

99.801

0.515

  comM Vibrio cholerae strain A1552

52.008

99.006

0.515

  comM Haemophilus influenzae Rd KW20

48.606

99.801

0.485

  comM Glaesserella parasuis strain SC1401

47.913

100

0.479

  comM Legionella pneumophila str. Paris

46.894

99.205

0.465

  comM Legionella pneumophila strain ERS1305867

46.894

99.205

0.465

  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.548

98.608

0.429


Multiple sequence alignment