Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   A6B40_RS04910 Genome accession   NZ_CP016226
Coordinates   1069743..1070072 (+) Length   109 a.a.
NCBI ID   WP_112110132.1    Uniprot ID   -
Organism   Mannheimia varigena strain 177     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1064743..1075072
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6B40_RS04885 (A6B40_04850) rpsL 1065028..1065402 (-) 375 WP_005708967.1 30S ribosomal protein S12 -
  A6B40_RS04890 (A6B40_04855) rfaC 1065522..1066481 (-) 960 WP_176671737.1 lipopolysaccharide heptosyltransferase RfaC -
  A6B40_RS04895 (A6B40_04860) waaF 1066552..1067589 (-) 1038 WP_176671738.1 lipopolysaccharide heptosyltransferase II -
  A6B40_RS04900 (A6B40_04865) - 1067624..1068043 (-) 420 WP_176671739.1 MliC family protein -
  A6B40_RS04905 (A6B40_04870) - 1068102..1069454 (-) 1353 WP_176671740.1 LysM-like peptidoglycan-binding domain-containing protein -
  A6B40_RS04910 (A6B40_04875) comEA/comE1 1069743..1070072 (+) 330 WP_112110132.1 ComEA family DNA-binding protein Machinery gene
  A6B40_RS04915 (A6B40_04880) asd 1070234..1071124 (+) 891 WP_176671741.1 archaetidylserine decarboxylase -
  A6B40_RS04920 (A6B40_04885) gshAB 1071288..1073564 (+) 2277 WP_176671742.1 bifunctional glutamate--cysteine ligase GshA/glutathione synthetase GshB -
  A6B40_RS04925 (A6B40_04890) manX 1073886..1074862 (+) 977 Protein_956 PTS mannose transporter subunit IIAB -

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11906.58 Da        Isoelectric Point: 6.3012

>NTDB_id=186394 A6B40_RS04910 WP_112110132.1 1069743..1070072(+) (comEA/comE1) [Mannheimia varigena strain 177]
MKQMKTLALGLLMSLNTFAFAQTPPQIEQNSMPQTEQQVTQINTNTVNINTASAAELQDKLVGIGEKKAQAIVDYRTKNG
NFKSIEQLAEVSGIGQATVEKNRANIVLE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=186394 A6B40_RS04910 WP_112110132.1 1069743..1070072(+) (comEA/comE1) [Mannheimia varigena strain 177]
ATGAAACAAATGAAAACTCTCGCGTTAGGCCTATTAATGAGCTTAAATACATTCGCTTTTGCTCAAACTCCACCTCAAAT
TGAGCAGAATAGTATGCCTCAAACTGAGCAACAAGTAACACAAATAAATACCAACACCGTAAACATCAACACCGCAAGTG
CTGCTGAATTGCAAGATAAGCTGGTAGGAATTGGCGAGAAAAAAGCTCAAGCGATTGTCGATTACCGTACCAAAAATGGT
AATTTTAAAAGCATTGAGCAGCTTGCCGAAGTATCCGGTATTGGACAAGCAACGGTAGAAAAAAATCGAGCAAATATCGT
TTTAGAGTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(43-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

53.097

100

0.55
  comE1/comEA Haemophilus influenzae Rd KW20

47.321

100

0.486
  comEA Vibrio cholerae C6706

48.113

97.248

0.468
  comEA Vibrio cholerae strain A1552

48.113

97.248

0.468
  comEA Vibrio campbellii strain DS40M4

40.741

99.083

0.404

Multiple sequence alignment