Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   A9P90_RS13280 Genome accession   NZ_CP016214
Coordinates   2895422..2896915 (+) Length   497 a.a.
NCBI ID   WP_065285050.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PA121617     
Function   require for natural transformation (predicted from homology)   
Unclear

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 2865032..2914177 2895422..2896915 within 0


Gene organization within MGE regions


Location: 2865032..2914177
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A9P90_RS13140 (A9P90_13140) algZ 2865154..2866230 (-) 1077 WP_003096404.1 alginate biosynthesis two-component system sensor histidine kinase AlgZ -
  A9P90_RS13145 (A9P90_13145) argH 2866455..2867849 (+) 1395 WP_003099239.1 argininosuccinate lyase -
  A9P90_RS33530 (A9P90_13150) - 2867993..2868616 (-) 624 WP_003099240.1 hypothetical protein -
  A9P90_RS13155 (A9P90_13155) - 2869195..2872464 (-) 3270 WP_003099242.1 hypothetical protein -
  A9P90_RS13160 (A9P90_13160) - 2872461..2874536 (-) 2076 WP_003104860.1 type VI secretion system tip protein VgrG -
  A9P90_RS13165 (A9P90_13165) - 2874736..2875254 (-) 519 WP_003083317.1 Hcp family type VI secretion system effector -
  A9P90_RS33275 - 2875306..2875497 (-) 192 WP_123788632.1 hypothetical protein -
  A9P90_RS13170 (A9P90_13170) - 2875547..2876527 (-) 981 WP_003123712.1 magnesium transporter CorA family protein -
  A9P90_RS13175 (A9P90_13175) - 2876629..2876904 (+) 276 WP_003114340.1 hypothetical protein -
  A9P90_RS13180 (A9P90_13180) - 2877037..2877804 (+) 768 WP_003096415.1 substrate-binding periplasmic protein -
  A9P90_RS13185 (A9P90_13185) - 2877847..2878080 (+) 234 WP_003096418.1 TIGR02647 family protein -
  A9P90_RS13190 (A9P90_13190) - 2878229..2881081 (+) 2853 WP_003146599.1 class I adenylate cyclase -
  A9P90_RS13195 (A9P90_13195) - 2881122..2881835 (+) 714 WP_003114342.1 glycine-rich domain-containing protein -
  A9P90_RS13200 (A9P90_13200) rnk 2881879..2882283 (-) 405 WP_003096424.1 nucleoside diphosphate kinase regulator -
  A9P90_RS32225 - 2882419..2882628 (-) 210 WP_003161172.1 DUF1289 domain-containing protein -
  A9P90_RS13205 (A9P90_13205) cyaY 2882606..2882941 (-) 336 WP_003121284.1 iron donor protein CyaY -
  A9P90_RS13210 (A9P90_13210) lptM 2883195..2883335 (+) 141 WP_003096430.1 LPS translocon maturation chaperone LptM -
  A9P90_RS13215 (A9P90_13215) lysA 2883346..2884593 (+) 1248 WP_003098220.1 diaminopimelate decarboxylase -
  A9P90_RS13220 (A9P90_13220) dapF 2884604..2885434 (+) 831 WP_003098223.1 diaminopimelate epimerase -
  A9P90_RS13225 (A9P90_13225) - 2885465..2886166 (+) 702 WP_003096433.1 DUF484 family protein -
  A9P90_RS13230 (A9P90_13230) xerC 2886186..2887097 (+) 912 WP_003096434.1 tyrosine recombinase XerC -
  A9P90_RS13235 (A9P90_13235) - 2887094..2887792 (+) 699 WP_003098226.1 HAD family hydrolase -
  A9P90_RS13240 (A9P90_13240) - 2887823..2888992 (-) 1170 WP_003098229.1 MFS transporter -
  A9P90_RS13245 (A9P90_13245) - 2889155..2890531 (+) 1377 WP_003098233.1 PLP-dependent aminotransferase family protein -
  A9P90_RS13250 (A9P90_13250) - 2890556..2891470 (-) 915 WP_003098236.1 fimbrial protein -
  A9P90_RS13255 (A9P90_13255) sutA 2891894..2892211 (-) 318 WP_003098240.1 transcriptional regulator SutA -
  A9P90_RS13260 (A9P90_13260) - 2892289..2892714 (-) 426 WP_003096441.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  A9P90_RS13265 (A9P90_13265) - 2892975..2894303 (-) 1329 WP_003098243.1 ammonium transporter -
  A9P90_RS13270 (A9P90_13270) glnK 2894343..2894681 (-) 339 WP_003096476.1 P-II family nitrogen regulator -
  A9P90_RS13275 (A9P90_13275) - 2895121..2895381 (+) 261 WP_003096478.1 accessory factor UbiK family protein -
  A9P90_RS13280 (A9P90_13280) comM 2895422..2896915 (+) 1494 WP_065285050.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  A9P90_RS13285 (A9P90_13285) betT 2897040..2899025 (+) 1986 WP_003096496.1 choline BCCT transporter BetT -
  A9P90_RS13290 (A9P90_13290) pchP 2899068..2900117 (-) 1050 WP_003110458.1 phosphorylcholine phosphatase -
  A9P90_RS13295 (A9P90_13295) - 2900268..2901185 (-) 918 WP_003098255.1 LysR substrate-binding domain-containing protein -
  A9P90_RS13300 (A9P90_13300) - 2901334..2902800 (+) 1467 WP_016254044.1 NorM family multidrug efflux MATE transporter -
  A9P90_RS13305 (A9P90_13305) - 2902712..2904388 (-) 1677 WP_003121292.1 putative bifunctional diguanylate cyclase/phosphodiesterase -
  A9P90_RS13310 (A9P90_13310) rep 2904576..2906585 (+) 2010 WP_003110454.1 DNA helicase Rep -
  A9P90_RS13315 (A9P90_13315) - 2906719..2908437 (+) 1719 WP_003098265.1 thiamine pyrophosphate-dependent enzyme -
  A9P90_RS13320 (A9P90_13320) - 2908601..2909173 (+) 573 WP_003096508.1 xanthine phosphoribosyltransferase -
  A9P90_RS13325 (A9P90_13325) - 2909181..2911040 (-) 1860 WP_003123719.1 acetyl-CoA hydrolase/transferase C-terminal domain-containing protein -
  A9P90_RS13330 (A9P90_13330) - 2911250..2911678 (-) 429 WP_003096511.1 c-type cytochrome -
  A9P90_RS13335 (A9P90_13335) - 2911882..2912430 (-) 549 WP_003096513.1 cupin domain-containing protein -
  A9P90_RS13340 (A9P90_13340) alr 2912581..2913654 (-) 1074 WP_016254045.1 alanine racemase -
  A9P90_RS13345 (A9P90_13345) - 2913745..2914098 (-) 354 WP_003098273.1 RidA family protein -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 53057.00 Da        Isoelectric Point: 7.9668

>NTDB_id=186286 A9P90_RS13280 WP_065285050.1 2895422..2896915(+) (comM) [Pseudomonas aeruginosa strain PA121617]
MSLAIVHSRAQVGVEAPCVSVEAHLANGLPSLTLVGLPETAVRESKDRVRSALLNAGFDFPARRITLNLAPADLPKDGGR
FDLAIALGILAASGQLPGTALDGLECLGELALSGAIRPVRGVLPAALAARDARRVLVVPKENAEEASLASGLTVFAVDHL
LEIAGHLSGQAPLPPHQARGLLRAPFPYPDLAEVQGQAAAKRALLVAAAGAHNLLLSGPPGTGKTLLASRLPGLLPALDE
DEALEVAAIHSVASHVPLRHWPQRPFRQPHHSASAPALVGGGSRPQPGEITLAHQGVLFLDELPEFERKVLEVLREPLES
GEIVIARANGRVRFPARFQLVAAMNPCPCGYLGDPSGRCRCTPEQVQRYRGKLSGPLLDRIDLHVSVLRESTSLQPGHGE
TATAEVSERVGAARQRQLARQGCANAHLDLQAMHRNCALAEADRRWLEAAGERLELSLRALHRILKVARTLADLERIDAI
ERRHLAEALQYRAMTST

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=186286 A9P90_RS13280 WP_065285050.1 2895422..2896915(+) (comM) [Pseudomonas aeruginosa strain PA121617]
ATGTCCCTGGCGATTGTCCACAGCCGAGCCCAGGTCGGCGTCGAAGCCCCCTGCGTCAGCGTCGAGGCGCACCTGGCCAA
CGGCCTGCCTTCGCTGACCCTGGTCGGCCTGCCGGAAACCGCGGTGCGCGAGAGCAAGGACCGCGTGCGCAGCGCCCTGC
TCAATGCCGGTTTCGACTTCCCCGCGCGGCGCATCACCCTCAACCTCGCCCCCGCCGACCTACCCAAGGACGGCGGTCGC
TTCGACCTGGCCATCGCACTCGGCATCCTCGCCGCCAGCGGCCAGTTGCCCGGCACCGCCCTCGACGGCCTGGAGTGCCT
CGGCGAACTGGCCCTGTCCGGGGCGATCCGCCCAGTGCGAGGCGTATTGCCGGCCGCGCTGGCGGCGCGCGACGCAAGGC
GCGTTCTGGTGGTACCGAAGGAAAATGCCGAAGAGGCCAGCCTGGCCAGCGGGCTGACGGTGTTCGCCGTGGACCACCTG
CTGGAGATCGCCGGACACCTCTCCGGCCAGGCCCCGCTGCCGCCCCACCAGGCCCGCGGCCTGCTCCGCGCGCCCTTCCC
TTATCCAGACCTGGCCGAGGTCCAGGGCCAGGCCGCCGCCAAGCGCGCCCTGCTGGTGGCCGCCGCCGGCGCGCACAACC
TGTTGCTCAGCGGCCCGCCGGGCACCGGCAAGACCCTCCTGGCCAGCCGCCTGCCCGGCCTGCTGCCGGCGCTCGACGAG
GACGAAGCCCTGGAGGTCGCGGCGATCCATTCGGTGGCCAGCCACGTCCCCCTCAGGCACTGGCCGCAGCGACCGTTCCG
CCAGCCGCACCACTCCGCCTCCGCGCCGGCCCTGGTCGGCGGCGGCAGCCGCCCGCAGCCGGGCGAGATCACCCTGGCGC
ACCAGGGCGTGCTGTTCCTCGACGAACTGCCGGAGTTCGAGCGCAAGGTCCTGGAGGTCCTGCGCGAGCCGCTGGAAAGC
GGCGAGATCGTCATTGCCCGGGCCAACGGCCGGGTACGTTTCCCGGCGCGCTTCCAACTGGTGGCGGCGATGAATCCCTG
TCCCTGTGGCTACCTCGGCGATCCCAGTGGCCGCTGCCGCTGCACCCCGGAACAGGTCCAGCGCTACCGGGGCAAGCTGT
CCGGACCGCTGCTCGATCGCATCGACCTGCACGTCAGCGTGCTCCGCGAAAGCACCAGCCTGCAGCCAGGACACGGCGAA
ACCGCTACCGCCGAGGTCAGCGAACGGGTGGGCGCCGCACGGCAACGGCAACTGGCCCGCCAGGGCTGCGCCAATGCCCA
TCTCGATCTCCAGGCGATGCACCGCAATTGTGCACTCGCCGAAGCGGACCGCCGCTGGCTGGAGGCTGCCGGAGAGCGCC
TGGAACTTTCCTTGCGCGCCTTGCATCGCATACTCAAGGTGGCCCGGACGCTGGCCGACCTGGAGCGCATCGATGCCATC
GAACGCCGGCACCTGGCGGAAGCCCTGCAGTATCGGGCAATGACCTCCACGTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

55.754

100

0.565
  comM Vibrio campbellii strain DS40M4

56.539

100

0.565
  comM Vibrio cholerae strain A1552

56.338

100

0.563
  comM Glaesserella parasuis strain SC1401

55.179

100

0.557
  comM Legionella pneumophila str. Paris

50.1

100

0.503
  comM Legionella pneumophila strain ERS1305867

50.1

100

0.503
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.776

100

0.469

Multiple sequence alignment