Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   dqs_RS19125 Genome accession   NZ_CP016210
Coordinates   4178655..4180154 (-) Length   499 a.a.
NCBI ID   WP_011767458.1    Uniprot ID   A1KBZ6
Organism   Azoarcus olearius strain DQS-4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4173655..4185154
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  dqs_RS19100 (dqs_3882) - 4173891..4174823 (+) 933 WP_011767453.1 branched-chain amino acid ABC transporter permease -
  dqs_RS19105 (dqs_3883) - 4174836..4175933 (+) 1098 WP_065341441.1 ABC transporter permease subunit -
  dqs_RS19110 (dqs_3884) - 4175930..4176703 (+) 774 WP_011767455.1 ABC transporter ATP-binding protein -
  dqs_RS19115 (dqs_3885) - 4176693..4177427 (+) 735 WP_065341442.1 ABC transporter ATP-binding protein -
  dqs_RS19120 (dqs_3886) - 4177406..4178602 (-) 1197 WP_011767457.1 multidrug effflux MFS transporter -
  dqs_RS19125 (dqs_3887) comM 4178655..4180154 (-) 1500 WP_011767458.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  dqs_RS19130 (dqs_3888) - 4180237..4180488 (-) 252 WP_011767459.1 accessory factor UbiK family protein -
  dqs_RS19135 (dqs_3889) - 4180773..4181513 (+) 741 WP_065341443.1 TorF family putative porin -
  dqs_RS19140 (dqs_3890) glnK 4181572..4181910 (+) 339 WP_011767461.1 P-II family nitrogen regulator -
  dqs_RS19145 (dqs_3891) - 4181925..4183331 (+) 1407 WP_011767462.1 ammonium transporter -
  dqs_RS19150 (dqs_3892) - 4183551..4184246 (+) 696 WP_065341444.1 OmpW/AlkL family protein -

Sequence

Protein


Download         Length: 499 a.a.        Molecular weight: 52378.07 Da        Isoelectric Point: 7.9737

>NTDB_id=186203 dqs_RS19125 WP_011767458.1 4178655..4180154(-) (comM) [Azoarcus olearius strain DQS-4]
MSLAIVRARALDGLAAPEVTVEVHLANGLPAFNLVGLPDTEVREARDRVRAALVTSQFEFPQRRITVNLAPADLPKEGGR
FDLAIALGILAASGQVEAAALDHYEFCGELSLNGGLRAVRGVLAAALAAAGAGRALVLPRANAAEAALAPAATVLPADDL
LAVCAHLNRHTLLEAQPAAQPGPQDAALPDLADVRGQAQARRALEVAAAGGHSLLLFGPPGTGKSMLAQRLPGLLPPMDE
AEALASAALQSLEGVFDAARWGLRPFRAPHHSASAAALVGGGANPRPGEISLAHHGVLFLDELPEFDRRVLEALREPLET
GAVTVARARRRVEFPARFQLVAAMNPCPCGYAGHPRRACRCTPEQVARYRARLSGPLLDRMDLTVEVPALGHAELADSAP
GEASAAVRARVLAARELQRARQGRPNARLEPSAVGALCTPDDAGARLLAQAMERLNLSARAYHRVLRVARTLADLAGIEV
PGAAQVAEAIQYRRSLDAR

Nucleotide


Download         Length: 1500 bp        

>NTDB_id=186203 dqs_RS19125 WP_011767458.1 4178655..4180154(-) (comM) [Azoarcus olearius strain DQS-4]
ATGTCGCTCGCCATCGTGCGCGCCCGTGCGCTGGACGGTCTTGCCGCGCCCGAGGTGACGGTCGAAGTTCATCTGGCCAA
CGGCCTGCCGGCCTTCAACCTGGTCGGCCTGCCCGACACCGAGGTGCGCGAGGCGCGCGACCGGGTGCGCGCGGCGCTCG
TCACCTCGCAGTTCGAATTTCCCCAGCGCCGCATCACCGTCAACCTGGCGCCCGCCGACCTGCCGAAGGAGGGCGGCCGT
TTCGATCTTGCGATCGCACTCGGCATCCTCGCCGCCTCCGGACAGGTGGAAGCGGCGGCGCTGGACCACTACGAATTCTG
CGGCGAACTCTCGCTCAACGGCGGCTTGCGCGCGGTGCGCGGCGTGCTCGCGGCGGCGCTTGCCGCGGCAGGTGCGGGGC
GCGCGCTGGTGCTGCCGCGCGCCAATGCGGCCGAAGCCGCGCTGGCGCCGGCGGCCACCGTGCTGCCTGCCGATGACCTG
CTCGCGGTCTGCGCCCATCTCAACCGCCATACCCTGCTCGAAGCACAGCCCGCCGCGCAGCCCGGCCCGCAGGACGCGGC
ACTGCCGGACCTCGCCGATGTGCGCGGCCAGGCCCAGGCCCGGCGGGCGCTGGAAGTCGCGGCGGCCGGCGGTCATTCGC
TGCTGCTGTTCGGTCCGCCCGGCACCGGCAAGTCGATGCTCGCGCAGCGGCTGCCCGGCCTGCTGCCGCCGATGGATGAG
GCCGAGGCGCTCGCCAGTGCCGCGCTGCAGTCGCTGGAGGGCGTGTTCGACGCCGCGCGCTGGGGCCTGCGTCCGTTCCG
TGCGCCCCATCATTCGGCCTCGGCCGCGGCGCTGGTGGGCGGCGGCGCCAATCCGCGCCCCGGCGAAATCTCGCTTGCCC
ATCACGGCGTGCTGTTTCTCGACGAACTGCCGGAATTCGACCGCCGCGTGCTCGAAGCGCTGCGCGAACCGCTCGAAACC
GGCGCGGTCACGGTCGCGCGGGCGCGGCGGCGGGTGGAGTTTCCCGCCCGTTTCCAGCTTGTCGCGGCGATGAATCCCTG
CCCCTGCGGCTACGCCGGCCATCCGCGCCGGGCCTGCCGCTGCACCCCTGAACAAGTCGCGCGCTATCGGGCGCGGCTGT
CCGGCCCTTTGCTCGACCGCATGGACCTCACGGTGGAAGTGCCGGCGCTTGGCCACGCGGAACTTGCGGATTCCGCGCCC
GGCGAGGCGAGCGCCGCGGTACGCGCGCGGGTGCTCGCCGCGCGCGAGCTGCAGCGCGCCCGCCAAGGAAGGCCCAACGC
CCGCCTCGAACCGTCCGCGGTGGGCGCGTTGTGCACGCCCGACGATGCCGGCGCGCGCCTGCTGGCGCAGGCGATGGAGC
GGCTGAACCTGTCGGCGCGGGCGTATCATCGCGTGCTTAGAGTGGCGCGCACCCTGGCCGATCTCGCCGGCATCGAGGTG
CCCGGCGCCGCCCAGGTCGCGGAAGCCATCCAGTACCGCCGCAGTCTCGACGCCCGCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-393)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A1KBZ6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.618

99.8

0.545
  comM Haemophilus influenzae Rd KW20

53.082

100

0.535
  comM Vibrio campbellii strain DS40M4

53.737

99.198

0.533
  comM Glaesserella parasuis strain SC1401

51.889

100

0.523
  comM Legionella pneumophila str. Paris

49.203

100

0.495
  comM Legionella pneumophila strain ERS1305867

49.203

100

0.495
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.059

100

0.457

Multiple sequence alignment