Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   A6B44_RS06850 Genome accession   NZ_CP016180
Coordinates   1432346..1432846 (+) Length   166 a.a.
NCBI ID   WP_090922838.1    Uniprot ID   A0A1H7Z4U0
Organism   Pasteurella skyensis strain 95A1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1427346..1437846
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6B44_RS06845 (A6B44_06800) - 1430315..1432156 (+) 1842 WP_090922839.1 SIR2 family protein -
  A6B44_RS06850 (A6B44_06805) ssb 1432346..1432846 (+) 501 WP_090922838.1 single-stranded DNA-binding protein Machinery gene
  A6B44_RS06855 (A6B44_06810) rluB 1432950..1433909 (-) 960 WP_090922837.1 23S rRNA pseudouridine(2605) synthase RluB -
  A6B44_RS06860 (A6B44_06815) - 1433959..1434579 (-) 621 WP_090922836.1 L-threonylcarbamoyladenylate synthase -
  A6B44_RS06865 (A6B44_06820) - 1434730..1435560 (-) 831 WP_090922834.1 PHP domain-containing protein -
  A6B44_RS06870 (A6B44_06825) relA 1435565..1437766 (-) 2202 WP_090922832.1 GTP diphosphokinase -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 18250.16 Da        Isoelectric Point: 5.2615

>NTDB_id=186108 A6B44_RS06850 WP_090922838.1 1432346..1432846(+) (ssb) [Pasteurella skyensis strain 95A1]
MAGVNKVIIVGNLGNDPDMRTMPNGEAVANLSVATSESWTDRNTGERREVTEWHRIVFFRRQAEVAGEYLRKGSKVYVEG
KLKTRKWQDQTGQDRYTTEIVGDVLQMLDSRGGQAGGFAPQAQQGGYSAPQQQNSFSSAPKPSTPSQAAPQQSAPPMDNF
DDDIPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=186108 A6B44_RS06850 WP_090922838.1 1432346..1432846(+) (ssb) [Pasteurella skyensis strain 95A1]
ATGGCTGGTGTAAATAAAGTAATTATTGTTGGTAATCTTGGAAATGATCCAGATATGAGAACAATGCCAAATGGTGAAGC
GGTAGCAAATTTAAGTGTAGCGACATCAGAAAGTTGGACAGATCGTAATACAGGCGAACGTCGTGAAGTGACTGAATGGC
ATAGAATTGTATTCTTCCGTCGTCAAGCAGAAGTCGCAGGTGAATATTTGCGTAAAGGTTCAAAAGTGTATGTTGAAGGG
AAATTAAAAACCCGCAAATGGCAAGATCAAACTGGGCAAGATCGCTATACAACTGAAATTGTAGGTGATGTATTACAAAT
GCTAGATAGTCGTGGTGGTCAAGCTGGAGGCTTTGCTCCTCAAGCACAACAAGGTGGTTACTCAGCACCACAACAGCAAA
ACAGTTTTAGTTCTGCCCCAAAACCATCAACACCATCTCAAGCAGCACCACAACAATCTGCTCCACCGATGGATAATTTT
GATGATGATATTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1H7Z4U0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

73.481

100

0.801
  ssb Vibrio cholerae strain A1552

55.747

100

0.584
  ssb Neisseria meningitidis MC58

47.126

100

0.494
  ssb Neisseria gonorrhoeae MS11

46.552

100

0.488
  ssb Latilactobacillus sakei subsp. sakei 23K

34.091

100

0.361

Multiple sequence alignment