Detailed information NTG0186106

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: A6B44_RS03350
• Genome accession: NZ_CP016180
• Coordinates: 723028..724218 (+)
• Length: 396 a.a.
• NCBI ID: WP_090922471.1
• Uniprot ID: -
• Organism: Pasteurella skyensis strain 95A1
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 718028..729218

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
A6B44_RS03330 (A6B44_03295)	-	718793..719443 (-)	651	WP_090922477.1	YchE family NAAT transporter	-
A6B44_RS03335 (A6B44_03300)	radA	719614..720990 (-)	1377	WP_090922475.1	DNA repair protein RadA	-
A6B44_RS03340 (A6B44_03305)	pilA	721180..721617 (+)	438	WP_090922485.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	Machinery gene
A6B44_RS03345 (A6B44_03310)	pilB	721644..723041 (+)	1398	WP_090922473.1	GspE/PulE family protein	Machinery gene
A6B44_RS03350 (A6B44_03315)	pilC	723028..724218 (+)	1191	WP_090922471.1	type II secretion system F family protein	Machinery gene
A6B44_RS03355 (A6B44_03320)	-	724215..724892 (+)	678	WP_090922469.1	prepilin peptidase	-
A6B44_RS03360 (A6B44_03325)	coaE	724916..725536 (+)	621	WP_090922467.1	dephospho-CoA kinase	-
A6B44_RS03365 (A6B44_03330)	yacG	725537..725728 (+)	192	WP_090922466.1	DNA gyrase inhibitor YacG	-
A6B44_RS03370 (A6B44_03335)	tnaA	726174..727592 (+)	1419	WP_090922465.1	tryptophanase	-
A6B44_RS03375 (A6B44_03340)	-	727674..728903 (+)	1230	WP_090922463.1	aromatic amino acid transporter	-

Sequence

Protein

• Length: 396 a.a.
• Molecular weight: 45090.00 Da
• Isoelectric Point: 10.0032

>NTDB_id=186106 A6B44_RS03350 WP_090922471.1 723028..724218(+) (pilC) [Pasteurella skyensis strain 95A1]
MNLYEFKWKGVNRFLQPQKGTVLATHHQVAENRLLQKGYRHLKIKRNFAFNRAPKKEEVTQFIHQLSLLLNAKITLRKAL
GVLLENCTNIKLYVWLQEIIALIEKGNSLSDSLTTLDKYFTSQEIQLIKIAERSGQLSVIFCNIADTRAKSEKLTKKVKK
VMFYPVIVLGISILLCLMLLIFIVPQFADLYQSKEKSLPLITALLFKTSQVLQQHYIALLSTTIFIVTVVIMLSKKTNII
SILKVNILSLLPIFNKIMSEHRIIFFCQNIALMQKAGIPLNIALSSFISKKEEDQVLQKELSNILTILNQGYPFSETLNP
SVFGEQVIQMIAIGEECGRLSQMLEHIVTLKQQKLDYKIDILSQLLEPALMLFIGVIIGTIIIALYLPIFDMGALI

Nucleotide

• Length: 1191 bp

>NTDB_id=186106 A6B44_RS03350 WP_090922471.1 723028..724218(+) (pilC) [Pasteurella skyensis strain 95A1]
ATGAATCTGTATGAGTTTAAGTGGAAAGGGGTCAATCGTTTCTTACAACCTCAAAAAGGAACAGTACTTGCGACTCATCA
TCAAGTTGCAGAAAATAGGTTGTTACAAAAGGGGTACCGTCACCTTAAAATTAAACGTAATTTTGCGTTTAATCGAGCAC
CTAAAAAGGAAGAGGTAACACAATTTATTCATCAATTATCCTTATTACTCAATGCAAAAATCACCCTTAGAAAAGCACTT
GGTGTATTGTTAGAAAATTGTACCAATATTAAACTTTATGTATGGTTGCAGGAGATAATTGCACTCATTGAAAAGGGCAA
TTCGTTATCGGACTCATTGACGACTTTAGATAAATATTTTACTTCACAAGAGATACAATTGATTAAAATAGCAGAACGAA
GCGGTCAGTTGTCAGTGATTTTTTGCAATATTGCAGATACTAGAGCTAAATCTGAAAAATTAACCAAAAAAGTAAAAAAA
GTGATGTTTTACCCTGTGATTGTATTGGGGATTTCGATATTACTTTGCTTAATGTTGCTGATTTTTATTGTTCCTCAATT
TGCCGATCTATATCAATCTAAAGAAAAAAGTTTGCCATTAATAACGGCATTATTATTCAAAACTTCTCAAGTGCTACAGC
AACATTACATCGCTCTGTTAAGTACGACAATATTTATTGTGACAGTCGTCATTATGCTATCTAAAAAGACGAATATCATC
TCAATACTAAAAGTTAACATACTGTCTTTATTGCCTATTTTTAATAAAATAATGAGCGAACATCGCATTATCTTTTTCTG
TCAAAATATTGCGTTAATGCAAAAAGCAGGGATTCCTTTAAATATTGCGCTGAGTTCTTTTATTTCAAAAAAAGAAGAGG
ATCAAGTTTTACAAAAAGAATTGTCTAATATATTAACTATTTTAAATCAGGGCTACCCTTTTTCTGAAACATTAAATCCT
TCAGTCTTTGGTGAACAAGTGATACAAATGATTGCTATTGGAGAAGAATGTGGCAGGTTATCACAAATGTTAGAGCATAT
AGTCACACTCAAACAACAAAAATTAGATTATAAAATTGATATACTTTCACAACTGTTAGAACCTGCTTTAATGCTGTTTA
TTGGCGTGATTATTGGTACTATTATTATTGCTCTTTATCTACCTATTTTTGATATGGGAGCGTTAATTTGA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (266-388)

• Type II secretion system (T2SS), protein F (T2SSF) (62-185)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Glaesserella parasuis strain SC1401	53.671	99.747	0.535
pilC	Haemophilus influenzae 86-028NP	39.75	100	0.402
pilC	Haemophilus influenzae Rd KW20	39.75	100	0.402