Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   A6E01_RS00165 Genome accession   NZ_CP016177
Coordinates   32592..34118 (+) Length   508 a.a.
NCBI ID   WP_065209336.1    Uniprot ID   A0AAN0XS88
Organism   Vibrio breoganii strain FF50     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 27592..39118
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6E01_RS00150 (A6E01_00150) ilvE 29296..30240 (-) 945 WP_017029779.1 branched-chain-amino-acid transaminase -
  A6E01_RS00155 (A6E01_00155) ilvM 30252..30536 (-) 285 WP_017029778.1 acetolactate synthase 2 small subunit -
  A6E01_RS00160 (A6E01_00160) ilvG 30548..32194 (-) 1647 WP_017029777.1 acetolactate synthase 2 catalytic subunit -
  A6E01_RS00165 (A6E01_00165) comM 32592..34118 (+) 1527 WP_065209336.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  A6E01_RS00170 (A6E01_00170) - 34281..35156 (+) 876 WP_065209337.1 acyltransferase -
  A6E01_RS00175 (A6E01_00175) - 35188..35790 (-) 603 WP_017029774.1 thiol:disulfide interchange protein DsbA/DsbL -
  A6E01_RS00180 (A6E01_00180) - 35825..36811 (-) 987 WP_017029773.1 serine/threonine protein kinase -
  A6E01_RS00185 (A6E01_00185) ccoG 36884..38302 (-) 1419 WP_017029772.1 cytochrome c oxidase accessory protein CcoG -
  A6E01_RS00190 (A6E01_00190) - 38482..38748 (-) 267 WP_017029771.1 YihD family protein -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 54929.98 Da        Isoelectric Point: 7.0129

>NTDB_id=186069 A6E01_RS00165 WP_065209336.1 32592..34118(+) (comM) [Vibrio breoganii strain FF50]
MGLAIVHSRASLGVSAPPVTVEVHIGPGMPGFHLVGLAETSVKESKDRVRSAILNSKFLFPSRKITVNLAPADLPKDGGR
FDLPIAIGILVASEQIPLNKLGDTELLGELALSGELRPVKGVISAAMASNGDGRTLITPHQNAKQVRLVDEESNLSARSL
LQVAAYLASQQQLELEAESETPPNSQSDMDMQDIIGQQQGKRALEIAAAGQHNLLFIGPPGTGKTMLASRLPDLIPPMSK
QEALEVASVASLVGSDLDSSTWRKRPFRTPHHSSSMVALVGGGSFPKPGEISLAHNGILFLDELVEFEKRVLDALREPLE
AGQVAISRASGKTSFPAQFQLIGALNPSPSGFYQGSQCQHTPQAILKYLGRISGPFLDRFDMSVEIPLLPLGTLSEGGDR
GESTADCRQRVAIARKAMLVRANKPNALLTNKEIERHCSLTKEDAEFLEFAIARLGLSIRAYHRIIRVARTIADLEQIES
IEKHHLSEALGYRSMDRLLRSLHQQIAE

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=186069 A6E01_RS00165 WP_065209336.1 32592..34118(+) (comM) [Vibrio breoganii strain FF50]
ATGGGACTGGCAATCGTTCATAGTCGAGCAAGCTTGGGTGTGTCTGCACCCCCAGTAACTGTTGAGGTTCACATAGGTCC
AGGTATGCCGGGCTTTCATCTTGTTGGACTTGCAGAGACCAGTGTTAAAGAGTCTAAAGACAGAGTGCGAAGTGCAATTC
TGAACTCTAAGTTTTTATTTCCGAGTCGTAAAATTACCGTTAATTTAGCGCCAGCGGATTTGCCTAAAGATGGCGGCCGT
TTTGACCTTCCTATTGCTATTGGCATCTTAGTGGCGAGTGAACAAATTCCATTAAACAAGTTGGGGGATACTGAGCTGCT
AGGCGAGTTAGCACTGTCTGGAGAGTTGCGCCCAGTCAAAGGGGTTATCTCTGCGGCAATGGCAAGCAATGGTGATGGGC
GAACCCTAATCACACCTCATCAAAACGCTAAGCAGGTGCGCTTGGTTGATGAAGAGAGCAATCTATCGGCTAGAAGCTTA
CTGCAAGTGGCCGCTTACTTGGCCTCTCAGCAACAGTTGGAATTGGAAGCTGAATCAGAAACGCCCCCTAATTCTCAGTC
TGATATGGATATGCAGGACATCATAGGGCAGCAACAAGGAAAGCGGGCCTTAGAGATTGCGGCTGCCGGACAGCACAATC
TGCTTTTCATTGGCCCTCCGGGTACAGGGAAAACCATGCTCGCCTCGCGCTTACCTGATCTGATACCGCCGATGAGCAAG
CAAGAGGCGCTGGAAGTGGCGAGTGTCGCCTCGCTGGTGGGGTCTGATTTAGACAGCAGTACATGGCGAAAGCGTCCCTT
TCGAACGCCGCATCATTCTAGCTCTATGGTAGCGTTAGTAGGGGGAGGCTCCTTCCCAAAACCCGGAGAGATCTCTTTAG
CCCACAACGGCATTTTGTTCTTAGATGAGCTTGTTGAGTTTGAAAAGCGAGTACTCGATGCCCTTCGTGAGCCCTTAGAG
GCGGGACAGGTAGCAATTTCTCGCGCCTCAGGGAAAACCAGCTTTCCTGCACAGTTTCAGCTTATAGGTGCGCTAAACCC
CAGCCCATCAGGGTTTTATCAAGGCAGTCAGTGCCAACACACGCCTCAGGCCATACTCAAATACCTAGGTCGTATATCGG
GTCCATTTCTAGACCGCTTTGATATGTCTGTGGAGATCCCTTTGTTGCCATTAGGTACTTTGAGTGAGGGTGGGGATAGA
GGTGAGTCCACCGCGGACTGTCGCCAAAGGGTGGCCATCGCTAGAAAGGCAATGCTGGTGCGTGCAAATAAGCCGAACGC
CTTGTTAACCAATAAAGAGATAGAGCGCCATTGTTCTCTAACAAAAGAAGATGCCGAGTTTCTGGAGTTTGCGATTGCTC
GTTTAGGTTTATCTATTCGTGCTTATCATCGGATTATTCGGGTGGCGCGCACCATTGCAGATCTGGAACAGATTGAGAGT
ATTGAAAAACATCACTTGAGTGAGGCCTTGGGCTATCGTTCTATGGATCGGTTGTTGCGATCGCTACATCAACAAATCGC
GGAGTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-389)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

67.921

99.409

0.675
  comM Vibrio cholerae strain A1552

67.723

99.409

0.673
  comM Glaesserella parasuis strain SC1401

60.511

100

0.606
  comM Haemophilus influenzae Rd KW20

58.696

99.606

0.585
  comM Legionella pneumophila str. Paris

48.104

98.622

0.474
  comM Legionella pneumophila strain ERS1305867

48.104

98.622

0.474
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.466

100

0.427

Multiple sequence alignment