Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   BAU08_RS10020 Genome accession   NZ_CP016171
Coordinates   2186431..2187945 (+) Length   504 a.a.
NCBI ID   WP_066347903.1    Uniprot ID   A0A193FV46
Organism   Bordetella bronchialis strain AU17976     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2181431..2192945
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAU08_RS10000 (BAU08_10000) - 2182532..2183200 (-) 669 WP_066669173.1 RraA family protein -
  BAU08_RS10005 (BAU08_10005) - 2183202..2184017 (-) 816 WP_066347895.1 carbon-nitrogen hydrolase family protein -
  BAU08_RS10010 (BAU08_10010) - 2184014..2184967 (-) 954 WP_066347897.1 LysR family transcriptional regulator -
  BAU08_RS10015 (BAU08_10015) - 2185053..2185958 (-) 906 WP_066669175.1 TauD/TfdA dioxygenase family protein -
  BAU08_RS27265 - 2185982..2186257 (+) 276 WP_156774050.1 hypothetical protein -
  BAU08_RS10020 (BAU08_10020) comM 2186431..2187945 (+) 1515 WP_066347903.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  BAU08_RS27270 - 2188016..2188174 (+) 159 WP_156770201.1 hypothetical protein -
  BAU08_RS10025 (BAU08_10025) - 2188285..2190582 (-) 2298 WP_066669177.1 phosphocholine-specific phospholipase C -
  BAU08_RS10030 (BAU08_10030) rpmI 2191329..2191526 (+) 198 WP_006387997.1 50S ribosomal protein L35 -
  BAU08_RS10035 (BAU08_10035) rplT 2191546..2191905 (+) 360 WP_066347909.1 50S ribosomal protein L20 -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 52581.69 Da        Isoelectric Point: 8.0967

>NTDB_id=185964 BAU08_RS10020 WP_066347903.1 2186431..2187945(+) (comM) [Bordetella bronchialis strain AU17976]
MSLAVLGSRALAGLRAVPVRVETHLAPGLPSFTVVGLADAAVRESRERVRAAIQNSGFEFPAGRLTVSLSPADLRKESAR
FDLPIAVGVLLASGQIPMPELLGRADTSCLSAMVLAGELSLTGVLVPIAAPLAIALGVAADHADATLVLPAASAAQAAHV
PGLQVLSAATLGDVVAHLSGEAAMPRAVPAPWPEAADGPCLSDVRGQGGARRALELAAAGGHSLLMVGPPGAGKSMLAHR
LPGLLPRLSLVQALEVSAIAGLAGGDATFSLRPPFRAPHHCATAAALVGGGTRPRPGEISLAHHGVLFLDELPEFDRRAL
EALREPLESGSVEIARAAHTLQYPARFQLIAAMNPCPCGWRGHPRIACRCTPEQAQRYRARLSGPLLDRIDLQIELPPPE
PDWMDGPPGEASAAVRDRVLDCRARQQARQGKVNARLDPRELTLHCPLADDARVLLRQAMASLNASGRAAHRVLRVARTA
ADLEGEPVVGARHIAEGVQLRQPG

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=185964 BAU08_RS10020 WP_066347903.1 2186431..2187945(+) (comM) [Bordetella bronchialis strain AU17976]
ATGAGTCTTGCCGTCCTGGGCAGCCGCGCGCTGGCGGGCCTGCGGGCGGTGCCGGTGCGGGTGGAAACCCATCTCGCCCC
GGGCCTGCCGTCGTTCACCGTGGTGGGCTTGGCCGACGCGGCCGTGCGCGAAAGCCGGGAACGCGTGCGGGCCGCCATCC
AGAACAGCGGCTTCGAATTTCCCGCCGGGCGGCTGACCGTCAGCCTGTCGCCCGCGGATCTGCGCAAGGAATCGGCGCGC
TTCGACCTGCCCATCGCCGTGGGCGTGCTGCTGGCCTCCGGCCAGATCCCCATGCCGGAACTGCTGGGCCGGGCGGACAC
GTCCTGCCTTTCCGCCATGGTGCTGGCCGGCGAGCTCTCGCTGACCGGTGTCCTGGTGCCCATTGCCGCGCCCCTGGCCA
TCGCCCTGGGCGTGGCGGCCGATCATGCGGATGCCACGCTCGTCCTGCCCGCGGCCAGCGCGGCGCAAGCGGCGCATGTT
CCCGGCTTGCAGGTGTTGTCCGCAGCCACCCTGGGCGATGTCGTGGCGCATCTTAGCGGCGAAGCCGCCATGCCGCGCGC
CGTGCCCGCGCCGTGGCCGGAGGCGGCCGACGGGCCCTGCCTGTCCGATGTGCGCGGGCAGGGCGGGGCCCGCCGCGCGC
TGGAGCTGGCGGCGGCCGGCGGCCACAGCCTGCTGATGGTGGGGCCGCCGGGCGCGGGCAAGAGCATGCTCGCGCATCGC
CTGCCGGGGCTGTTGCCCCGGCTGTCGCTCGTCCAGGCGCTGGAGGTGTCCGCCATCGCCGGCCTGGCGGGTGGCGATGC
AACCTTCAGTCTCCGGCCCCCGTTCCGGGCGCCACATCATTGCGCCACCGCGGCCGCCCTGGTGGGCGGCGGCACGCGTC
CGCGGCCGGGTGAAATCAGCCTGGCGCATCACGGCGTATTGTTCCTGGACGAATTGCCGGAGTTCGATCGCCGCGCGCTG
GAGGCCTTGCGCGAACCCCTGGAAAGCGGCAGCGTGGAGATCGCCCGCGCCGCCCATACCTTGCAGTATCCGGCGCGTTT
CCAGTTGATCGCCGCCATGAATCCCTGTCCCTGCGGATGGCGCGGGCATCCTCGCATCGCCTGTCGCTGCACGCCTGAAC
AGGCCCAGCGCTACCGCGCCAGGTTGTCCGGTCCCTTGCTGGATCGCATCGATCTTCAGATAGAGTTGCCGCCGCCCGAG
CCCGATTGGATGGACGGCCCCCCGGGCGAGGCATCGGCCGCCGTGCGCGATCGTGTCCTAGACTGCCGCGCGCGCCAGCA
GGCACGCCAGGGCAAGGTGAACGCGCGGCTCGACCCGCGCGAATTGACGCTACATTGTCCCCTCGCGGATGATGCGCGGG
TCTTGTTGCGCCAGGCGATGGCCAGCCTGAACGCGTCCGGACGCGCCGCGCATCGCGTGCTAAGGGTGGCCCGCACGGCC
GCGGACCTGGAAGGCGAGCCCGTCGTCGGCGCGCGCCACATCGCGGAAGGGGTGCAGCTGCGGCAACCCGGATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-151)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(409-501)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(201-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A193FV46

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

47.929

100

0.482
  comM Vibrio campbellii strain DS40M4

47.337

100

0.476
  comM Haemophilus influenzae Rd KW20

46.078

100

0.466
  comM Glaesserella parasuis strain SC1401

45.401

100

0.46
  comM Legionella pneumophila strain ERS1305867

45.187

100

0.456
  comM Legionella pneumophila str. Paris

45.187

100

0.456
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

41.942

100

0.429

Multiple sequence alignment