Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   AL025_RS17060 Genome accession   NZ_CP016163
Coordinates   879855..880502 (+) Length   215 a.a.
NCBI ID   WP_236907390.1    Uniprot ID   -
Organism   Enterococcus faecium strain ISMMS_VRE_11     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 874855..885502
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL025_RS04420 (AL025_04155) - 874909..875529 (-) 621 WP_002287272.1 FMN-dependent NADH-azoreductase -
  AL025_RS04425 (AL025_04160) - 875721..876017 (-) 297 WP_002287271.1 rhodanese-like domain-containing protein -
  AL025_RS04430 (AL025_04165) - 876221..876871 (+) 651 WP_002287269.1 TetR family transcriptional regulator -
  AL025_RS04435 (AL025_04170) - 876887..878614 (+) 1728 WP_002287267.1 ABC transporter ATP-binding protein -
  AL025_RS17055 - 878758..879572 (+) 815 Protein_797 ABC transporter ATP-binding protein -
  AL025_RS17060 rcrQ 879855..880502 (+) 648 WP_236907390.1 ATP-binding cassette domain-containing protein Regulator
  AL025_RS04455 (AL025_04180) - 881206..882075 (+) 870 WP_002287264.1 VOC family protein -
  AL025_RS04460 (AL025_04185) - 882284..883309 (+) 1026 WP_002287263.1 serine hydrolase domain-containing protein -
  AL025_RS04465 (AL025_04190) manA 883348..884298 (+) 951 WP_002287262.1 mannose-6-phosphate isomerase, class I -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 23958.65 Da        Isoelectric Point: 4.2743

>NTDB_id=185940 AL025_RS17060 WP_236907390.1 879855..880502(+) (rcrQ) [Enterococcus faecium strain ISMMS_VRE_11]
MVAIVGPTGAGKTTLINLLERFYDVSGGSIRYDGVDTRDLSRDELRAQFSMVLQDTWLFTGSIYDNIKYGNDDATDEQII
EAAKAAHVDDFVRKLPEGYNTVLNEDASNISQGQRQLITIARAFLANPDVLILDEATSSVDTRTEILIQKAMNRLLENRT
SFVVAHRLSTIRDADNIIVMNHGSIVETGNHDTLMEKDGFYADLYNSQFSEEEAS

Nucleotide


Download         Length: 648 bp        

>NTDB_id=185940 AL025_RS17060 WP_236907390.1 879855..880502(+) (rcrQ) [Enterococcus faecium strain ISMMS_VRE_11]
ATGGTCGCTATTGTAGGTCCGACTGGTGCAGGGAAGACGACACTGATCAACCTTCTTGAACGGTTCTACGATGTTTCTGG
AGGTAGTATTCGTTACGATGGTGTAGATACCCGTGATCTTTCACGTGATGAATTGCGCGCACAGTTTTCAATGGTACTGC
AAGATACTTGGCTGTTTACAGGAAGTATCTATGACAATATCAAATATGGGAACGACGATGCAACAGACGAACAAATCATT
GAGGCTGCTAAAGCTGCTCACGTAGACGATTTTGTTCGTAAATTGCCAGAAGGATATAACACTGTATTAAACGAGGATGC
AAGCAATATTTCGCAAGGGCAGCGTCAGCTAATCACAATTGCGCGGGCATTCTTAGCAAATCCAGATGTCCTGATCCTTG
ATGAAGCAACATCTAGTGTAGATACACGAACAGAAATACTGATTCAAAAAGCGATGAACCGCCTATTGGAAAACCGGACA
AGTTTCGTTGTTGCTCACCGCTTGTCTACAATACGCGATGCAGACAACATTATTGTGATGAATCATGGTTCGATCGTAGA
AACAGGAAACCACGATACATTGATGGAAAAAGACGGATTCTATGCAGATCTTTATAACAGTCAGTTTTCTGAAGAAGAAG
CTTCATAG

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(1-138)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

61.972

99.07

0.614
  comA/nlmT Streptococcus mutans UA159

42.308

96.744

0.409
  comA Streptococcus mitis NCTC 12261

39.904

96.744

0.386
  comA Streptococcus pneumoniae Rx1

38.942

96.744

0.377
  comA Streptococcus mitis SK321

38.942

96.744

0.377
  comA Streptococcus pneumoniae D39

38.942

96.744

0.377
  comA Streptococcus pneumoniae R6

38.942

96.744

0.377
  comA Streptococcus pneumoniae TIGR4

38.462

96.744

0.372
  rcrP Streptococcus mutans UA159

37.209

100

0.372
  comA Streptococcus gordonii str. Challis substr. CH1

38.35

95.814

0.367

Multiple sequence alignment