Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   A6J54_RS13150 Genome accession   NZ_CP020402
Coordinates   2217948..2218229 (-) Length   93 a.a.
NCBI ID   WP_002214428.1    Uniprot ID   -
Organism   Neisseria meningitidis strain FDAARGOS_215     
Function   processing and transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 2212948..2223229
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J54_RS13115 (A6J54_12715) - 2213247..2213885 (-) 639 WP_002217866.1 7-carboxy-7-deazaguanine synthase QueE -
  A6J54_RS13120 (A6J54_12720) - 2213882..2214253 (-) 372 WP_002217868.1 DUF1304 domain-containing protein -
  A6J54_RS13125 (A6J54_12725) queD 2214522..2214944 (-) 423 WP_002214424.1 6-carboxytetrahydropterin synthase QueD -
  A6J54_RS13130 (A6J54_12730) - 2214951..2215469 (-) 519 WP_080542358.1 DUF1543 domain-containing protein -
  A6J54_RS13135 (A6J54_12735) queC 2215497..2216156 (-) 660 WP_080542359.1 7-cyano-7-deazaguanine synthase QueC -
  A6J54_RS14470 - 2216360..2216546 (-) 187 Protein_2150 NAD(P)H-quinone oxidoreductase -
  A6J54_RS13145 (A6J54_12745) - 2216701..2217927 (+) 1227 WP_002217875.1 YihY family inner membrane protein -
  A6J54_RS13150 (A6J54_12750) comA 2217948..2218229 (-) 282 WP_002214428.1 ATP-binding cassette domain-containing protein Regulator
  A6J54_RS13155 (A6J54_14490) - 2218308..2218442 (-) 135 Protein_2153 IS1595 family transposase -
  A6J54_RS13160 (A6J54_12760) - 2218441..2218899 (-) 459 WP_002214429.1 hypothetical protein -
  A6J54_RS14855 - 2219464..2219667 (-) 204 WP_002261355.1 hypothetical protein -
  A6J54_RS13180 (A6J54_12785) - 2220382..2221320 (-) 939 WP_080542360.1 immunity 49 family protein -
  A6J54_RS14860 - 2221323..2221496 (-) 174 WP_153957336.1 hypothetical protein -
  A6J54_RS13185 (A6J54_14500) - 2221525..2221764 (+) 240 Protein_2158 IS30 family transposase -
  A6J54_RS13190 (A6J54_12800) - 2221832..2222257 (-) 426 WP_080542362.1 hypothetical protein -
  A6J54_RS13195 (A6J54_12805) - 2222310..2223061 (+) 752 WP_096001759.1 IS5-like element IS1301 family transposase -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10070.73 Da        Isoelectric Point: 6.7158

>NTDB_id=185644 A6J54_RS13150 WP_002214428.1 2217948..2218229(-) (comA) [Neisseria meningitidis strain FDAARGOS_215]
MIHEEISAMPMGYETLIGDMGSALSGGQKQRIVLARALYCEPKILFLDAATSHLDIANEKAVNANLNGLSIIKIMAAHRK
ETVESADRKMSLG

Nucleotide


Download         Length: 282 bp        

>NTDB_id=185644 A6J54_RS13150 WP_002214428.1 2217948..2218229(-) (comA) [Neisseria meningitidis strain FDAARGOS_215]
ATGATTCACGAAGAAATCTCCGCCATGCCTATGGGCTATGAAACCTTGATCGGCGATATGGGCAGCGCACTGTCAGGCGG
ACAAAAACAACGCATCGTATTGGCGCGGGCCTTATATTGCGAACCGAAAATCCTATTTTTAGATGCAGCGACCAGCCATT
TGGATATTGCCAATGAAAAAGCAGTCAATGCAAACTTGAATGGCTTGTCTATCATAAAAATTATGGCGGCACACAGAAAG
GAAACGGTGGAATCAGCAGATAGGAAAATGTCTTTAGGATAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(14-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Streptococcus mitis SK321

45.055

97.849

0.441
  comA/nlmT Streptococcus mutans UA159

45.977

93.548

0.43
  comA Streptococcus pneumoniae Rx1

43.956

97.849

0.43
  comA Streptococcus pneumoniae D39

43.956

97.849

0.43
  comA Streptococcus pneumoniae R6

43.956

97.849

0.43
  comA Streptococcus pneumoniae TIGR4

43.956

97.849

0.43
  comA Streptococcus mitis NCTC 12261

43.956

97.849

0.43
  comA Streptococcus gordonii str. Challis substr. CH1

42.857

97.849

0.419