Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   A6J53_RS14605 Genome accession   NZ_CP020401
Coordinates   520420..520824 (-) Length   134 a.a.
NCBI ID   WP_309473688.1    Uniprot ID   -
Organism   Neisseria meningitidis strain FDAARGOS_214     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 515420..525824
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J53_RS03315 (A6J53_03235) - 516508..516915 (-) 408 Protein_504 pilin -
  A6J53_RS03330 (A6J53_03250) - 517265..518016 (+) 752 WP_096001759.1 IS5-like element IS1301 family transposase -
  A6J53_RS03335 (A6J53_03255) - 518237..518608 (-) 372 Protein_506 pilin -
  A6J53_RS03345 (A6J53_03260) - 518838..519263 (-) 426 Protein_507 pilin -
  A6J53_RS03365 (A6J53_03275) - 520081..520427 (-) 347 Protein_508 pilin -
  A6J53_RS14605 (A6J53_14165) pilE 520420..520824 (-) 405 WP_309473688.1 pilin Machinery gene
  A6J53_RS03375 (A6J53_03285) - 520777..521784 (+) 1008 WP_082301578.1 IS5 family transposase -
  A6J53_RS15165 - 521931..522056 (-) 126 Protein_511 pilin -
  A6J53_RS03400 (A6J53_03305) - 522766..523164 (-) 399 Protein_512 pilin -
  A6J53_RS03410 (A6J53_03310) - 523295..523546 (-) 252 Protein_513 pilin -
  A6J53_RS03415 (A6J53_03315) - 523575..523904 (-) 330 WP_002216146.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  A6J53_RS16000 - 523982..524068 (-) 87 Protein_515 DUF2061 domain-containing protein -
  A6J53_RS03425 (A6J53_03325) - 524156..524353 (-) 198 WP_002242127.1 DUF2061 domain-containing protein -
  A6J53_RS03430 (A6J53_03330) - 524475..525428 (+) 954 WP_002256250.1 D-2-hydroxyacid dehydrogenase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 14011.52 Da        Isoelectric Point: 6.9585

>NTDB_id=185575 A6J53_RS14605 WP_309473688.1 520420..520824(-) (pilE) [Neisseria meningitidis strain FDAARGOS_214]
MSGNHGLGGLLEEGAHGTSPKCLGGNLGDFGEFCKGLGKYVKEVTVANGVVTATMLSSGVNKEIQGRKLSLWAKRQDGSV
KWFCGQPVTRDKADADADADAVTADTAAANKKIDTNHSHEPTSRHSRESGNDGI

Nucleotide


Download         Length: 405 bp        

>NTDB_id=185575 A6J53_RS14605 WP_309473688.1 520420..520824(-) (pilE) [Neisseria meningitidis strain FDAARGOS_214]
GTGTCTGGCAATCATGGCTTGGGCGGTTTGCTGGAAGAAGGTGCTCATGGAACATCCCCTAAATGTCTTGGTGGGAATTT
AGGGGATTTTGGGGAATTTTGCAAAGGTCTCGGAAAATATGTTAAGGAAGTTACAGTCGCAAACGGCGTCGTTACCGCCA
CAATGCTTTCAAGCGGCGTAAACAAAGAAATCCAAGGCAGAAAACTCTCCCTGTGGGCCAAGCGTCAAGACGGTTCGGTA
AAATGGTTCTGCGGACAGCCGGTTACGCGCGACAAAGCCGACGCCGACGCCGACGCCGACGCCGTTACCGCCGACACCGC
CGCCGCCAACAAGAAGATCGACACCAATCATTCCCACGAACCTACATCCCGTCATTCCCGCGAAAGTGGGAATGACGGGA
TTTAA

Domains

Predicted by InterProScan.

Pilin (bacterial filament) (Pilin)

(41-95)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

68.75

59.701

0.41
  pilE Neisseria gonorrhoeae strain FA1090

66.25

59.701

0.396

Multiple sequence alignment