Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   A9798_RS16395 Genome accession   NZ_CP016043
Coordinates   3676577..3678100 (+) Length   507 a.a.
NCBI ID   WP_024524187.1    Uniprot ID   A0A376DNM0
Organism   Edwardsiella hoshinae strain ATCC 35051     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3671577..3683100
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A9798_RS16380 (A9798_16380) - 3672941..3673870 (-) 930 WP_070245536.1 branched-chain amino acid transaminase -
  A9798_RS16385 (A9798_16385) ilvM 3673920..3674210 (-) 291 WP_070245538.1 acetolactate synthase 2 small subunit -
  A9798_RS16390 (A9798_16390) ilvG 3674207..3675856 (-) 1650 WP_024524186.1 acetolactate synthase 2 catalytic subunit -
  A9798_RS17520 ilvL 3675994..3676092 (-) 99 WP_071526333.1 ilv operon leader peptide -
  A9798_RS16395 (A9798_16395) comM 3676577..3678100 (+) 1524 WP_024524187.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  A9798_RS16400 (A9798_16400) tdh 3678161..3679186 (-) 1026 WP_024524188.1 L-threonine 3-dehydrogenase -
  A9798_RS16405 (A9798_16405) - 3679196..3680392 (-) 1197 WP_024524189.1 glycine C-acetyltransferase -
  A9798_RS16410 (A9798_16410) rfaD 3680699..3681628 (+) 930 WP_070245540.1 ADP-glyceromanno-heptose 6-epimerase -
  A9798_RS16415 (A9798_16415) rfaF 3681652..3682728 (+) 1077 WP_070245543.1 ADP-heptose--LPS heptosyltransferase RfaF -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54230.55 Da        Isoelectric Point: 9.1063

>NTDB_id=185572 A9798_RS16395 WP_024524187.1 3676577..3678100(+) (comM) [Edwardsiella hoshinae strain ATCC 35051]
MTLASVYTRAALGIQAPEVRIEAHIGNGLPGFTLVGLPETAVREAKDRVRCAILNSGFQFPAKRITLNLAPADLPKEGGR
YDLPMALALLLAAGQLSSVRTIHHYEFMGELALSGELRSVPGILPAAISAIQAGRTLIAPCGNADELGLLAAPRPPIAPS
LLAVCAFLREQAVLDRPPPRQPSNDYASLGDMADIIGQAQARRALEIAAAGGHNLLLLGPPGTGKTMLACRLPGILPPMT
PDEALAQATISSLAYPGSEQTRYGVRPFRAPHHSASMAALIGGGSLPRPGEISLAHHGVLFLDELPEFDRRTLDALREPL
ESGIVHLSRARIKVSFPARVQLVAAMNPSSAGHGAGAGSRATPGQVLRYLSRLSGPLLDRFDLSIEVPLLPAGILASQHA
NGEDSATLRQRVTAVRARQYARSGRLNAHLEGVERDRVCRLSTHDAYFLEQALTRLGLSVRAWHRLLKVARTLADMESME
NIAQHHLAEALSYRAIDRLLHTLLQGE

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=185572 A9798_RS16395 WP_024524187.1 3676577..3678100(+) (comM) [Edwardsiella hoshinae strain ATCC 35051]
ATGACACTGGCCAGTGTATACACCCGTGCCGCCCTCGGCATACAAGCTCCCGAAGTCAGGATCGAAGCACATATCGGCAA
TGGATTACCGGGTTTTACCCTGGTTGGTCTACCTGAAACGGCGGTACGCGAGGCAAAAGATCGCGTACGCTGCGCCATCC
TGAACAGCGGATTCCAGTTTCCCGCCAAACGTATCACTCTCAATCTGGCTCCCGCCGATCTCCCTAAGGAGGGTGGACGT
TATGATCTACCGATGGCATTGGCTCTACTGCTCGCTGCGGGGCAGCTCTCCAGCGTACGCACCATACATCACTATGAGTT
TATGGGGGAGCTCGCCCTCTCCGGTGAGCTCCGCTCAGTACCGGGCATTCTACCGGCGGCAATCAGCGCCATACAGGCGG
GCCGGACGTTAATCGCCCCCTGTGGCAACGCCGACGAGCTTGGATTGCTGGCCGCACCACGCCCCCCTATCGCCCCTTCC
CTACTCGCCGTTTGCGCCTTCCTGCGCGAACAGGCTGTCTTGGACAGACCGCCGCCCCGCCAACCCAGCAATGACTATGC
GTCTCTGGGGGATATGGCCGATATCATCGGCCAGGCGCAAGCCAGACGCGCCCTGGAGATCGCTGCCGCAGGCGGGCATA
ACCTGCTACTCCTTGGGCCTCCGGGTACCGGGAAAACCATGCTGGCCTGTCGTCTACCGGGGATCCTGCCGCCGATGACT
CCCGATGAGGCGTTGGCGCAGGCAACAATCAGTAGCTTGGCCTATCCAGGTTCGGAGCAGACACGCTATGGCGTGCGTCC
GTTTCGCGCACCACACCATAGCGCTTCGATGGCGGCACTGATCGGCGGCGGCTCATTGCCGCGCCCAGGCGAGATCTCCT
TAGCTCATCACGGTGTCCTGTTCCTCGATGAGTTACCCGAGTTCGATCGACGCACCTTGGATGCCTTGCGCGAGCCGTTG
GAGTCCGGCATCGTTCACCTTTCCCGTGCCCGCATCAAAGTCAGCTTTCCCGCCCGTGTGCAGTTGGTGGCGGCGATGAA
TCCCAGCAGCGCTGGACACGGGGCTGGCGCAGGGAGCCGAGCCACACCAGGTCAAGTTCTGCGCTACCTCTCCCGCCTTT
CCGGGCCGCTGCTTGACCGCTTCGATCTCTCTATCGAGGTGCCGCTATTACCCGCAGGCATATTGGCCAGCCAACACGCG
AACGGCGAAGACAGTGCCACACTGCGCCAACGCGTCACCGCCGTCCGGGCACGGCAATACGCCCGTAGCGGCCGGCTGAA
TGCACATTTGGAGGGGGTAGAGCGTGATCGTGTTTGCCGCCTAAGTACGCACGATGCATACTTCCTGGAACAGGCTCTGA
CCCGTCTCGGCCTGTCGGTGCGCGCCTGGCACCGTCTACTGAAAGTCGCCCGCACGCTCGCCGATATGGAAAGCATGGAG
AACATCGCCCAACACCATCTGGCCGAAGCCCTAAGCTATCGCGCCATCGATCGACTTTTACACACGCTACTGCAAGGGGA
GTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A376DNM0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

58.847

99.211

0.584
  comM Vibrio campbellii strain DS40M4

57.228

99.606

0.57
  comM Haemophilus influenzae Rd KW20

56.41

100

0.564
  comM Glaesserella parasuis strain SC1401

55.75

100

0.564
  comM Legionella pneumophila str. Paris

47

98.619

0.464
  comM Legionella pneumophila strain ERS1305867

47

98.619

0.464
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.59

100

0.436

Multiple sequence alignment