Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   FBA2_RS06610 Genome accession   NZ_CP016028
Coordinates   1309796..1310104 (-) Length   102 a.a.
NCBI ID   WP_064777316.1    Uniprot ID   -
Organism   Latilactobacillus curvatus strain FBA2     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1304796..1315104
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FBA2_RS06575 (FBA2_06575) - 1305466..1305918 (-) 453 WP_064777312.1 hypothetical protein -
  FBA2_RS06580 (FBA2_06580) - 1305978..1307171 (-) 1194 WP_064777313.1 acetate/propionate family kinase -
  FBA2_RS06585 (FBA2_06585) - 1307193..1308203 (-) 1011 WP_064777314.1 class I SAM-dependent methyltransferase -
  FBA2_RS06590 (FBA2_06590) - 1308328..1308651 (-) 324 WP_039099486.1 hypothetical protein -
  FBA2_RS06595 (FBA2_06595) - 1308629..1309027 (-) 399 WP_235601662.1 ComGF family competence protein -
  FBA2_RS10165 - 1309052..1309105 (-) 54 Protein_1298 hypothetical protein -
  FBA2_RS09820 (FBA2_06600) - 1309080..1309307 (-) 228 WP_004270907.1 hypothetical protein -
  FBA2_RS06605 (FBA2_06605) - 1309372..1309731 (-) 360 WP_158022155.1 hypothetical protein -
  FBA2_RS06610 (FBA2_06610) comGC 1309796..1310104 (-) 309 WP_064777316.1 competence type IV pilus major pilin ComGC Machinery gene
  FBA2_RS06615 (FBA2_06615) comGB 1310101..1311102 (-) 1002 WP_064777317.1 type II secretion system F family protein Machinery gene
  FBA2_RS06620 (FBA2_06620) comGA 1311092..1311967 (-) 876 WP_039099523.1 competence type IV pilus ATPase ComGA Machinery gene
  FBA2_RS06625 (FBA2_06625) - 1312071..1312802 (-) 732 WP_004270897.1 YebC/PmpR family DNA-binding transcriptional regulator -
  FBA2_RS06630 (FBA2_06630) - 1312892..1313392 (-) 501 WP_039099520.1 VanZ family protein -
  FBA2_RS06635 (FBA2_06635) - 1313495..1313872 (+) 378 WP_039099519.1 hypothetical protein -
  FBA2_RS06645 (FBA2_06645) - 1314053..1314388 (-) 336 WP_052202779.1 hypothetical protein -
  FBA2_RS06650 (FBA2_06650) - 1314583..1314822 (+) 240 WP_004270892.1 cytochrome b5 domain-containing protein -

Sequence

Protein


Download         Length: 102 a.a.        Molecular weight: 11208.14 Da        Isoelectric Point: 9.9770

>NTDB_id=185461 FBA2_RS06610 WP_064777316.1 1309796..1310104(-) (comGC) [Latilactobacillus curvatus strain FBA2]
MKKKRNAFTLIEMVVVLAVIAMLVLLIAPNLMHQKETAVQKTDTALVATIQTQVELAEDDGKTVSSLADLASGEKYLTNN
QVKQAEKRGITIKDNKVVQNTK

Nucleotide


Download         Length: 309 bp        

>NTDB_id=185461 FBA2_RS06610 WP_064777316.1 1309796..1310104(-) (comGC) [Latilactobacillus curvatus strain FBA2]
ATGAAGAAGAAAAGAAATGCATTTACATTGATCGAAATGGTCGTTGTGCTAGCTGTGATAGCAATGTTAGTCTTGTTAAT
TGCACCTAATTTAATGCATCAGAAAGAGACAGCTGTGCAAAAAACGGATACGGCTCTAGTGGCAACGATTCAAACACAAG
TTGAATTAGCTGAGGATGACGGTAAAACGGTGTCGAGTCTAGCCGATTTAGCATCAGGTGAAAAATATTTAACCAATAAT
CAGGTTAAACAAGCTGAAAAACGCGGCATAACAATTAAGGATAATAAAGTTGTTCAAAATACAAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Latilactobacillus sakei subsp. sakei 23K

59

98.039

0.578
  comGC Staphylococcus aureus MW2

36.792

100

0.382
  comGC Staphylococcus aureus N315

36.792

100

0.382

Multiple sequence alignment