Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   A9404_RS08830 Genome accession   NZ_CP016027
Coordinates   2013415..2014929 (+) Length   504 a.a.
NCBI ID   WP_066100415.1    Uniprot ID   A0A191ZHY3
Organism   Halothiobacillus diazotrophicus strain LS2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2008415..2019929
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A9404_RS08805 (A9404_08805) - 2009648..2010202 (+) 555 WP_066100405.1 DJ-1 family glyoxalase III -
  A9404_RS08810 (A9404_08810) - 2010334..2011641 (-) 1308 WP_156521295.1 ammonium transporter -
  A9404_RS08815 (A9404_08815) - 2011654..2011992 (-) 339 WP_066100410.1 P-II family nitrogen regulator -
  A9404_RS08820 (A9404_08820) - 2012021..2012803 (-) 783 WP_197490322.1 TorF family putative porin -
  A9404_RS08825 (A9404_08825) - 2013050..2013313 (+) 264 WP_066100413.1 accessory factor UbiK family protein -
  A9404_RS08830 (A9404_08830) comM 2013415..2014929 (+) 1515 WP_066100415.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  A9404_RS08835 (A9404_08835) zapE 2015011..2016138 (-) 1128 WP_197490323.1 cell division protein ZapE -
  A9404_RS08840 (A9404_08840) - 2016234..2016533 (-) 300 WP_082922860.1 succinate dehydrogenase assembly factor 2 -
  A9404_RS08845 (A9404_08845) - 2016539..2017237 (-) 699 WP_066100418.1 succinate dehydrogenase iron-sulfur subunit -
  A9404_RS08850 (A9404_08850) sdhA 2017279..2019036 (-) 1758 WP_066100421.1 succinate dehydrogenase flavoprotein subunit -
  A9404_RS08855 (A9404_08855) sdhD 2019060..2019410 (-) 351 WP_066100424.1 succinate dehydrogenase, hydrophobic membrane anchor protein -
  A9404_RS08860 (A9404_08860) sdhC 2019404..2019778 (-) 375 WP_197490324.1 succinate dehydrogenase, cytochrome b556 subunit -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 53192.06 Da        Isoelectric Point: 8.5986

>NTDB_id=185427 A9404_RS08830 WP_066100415.1 2013415..2014929(+) (comM) [Halothiobacillus diazotrophicus strain LS2]
MSIAKVFSRARIGIDAPLITVEAHVSNGLPAVTLVGLPETAVRESRDRVRAAILSSGFEFPPRRLTINLAPADLPKEGAR
FDLAIAIAILAVTGQIPLTEGQALSTYEFLGELSLDGGLRPVTGALPAAIGARDHERTLVIPPSSAAEVAVINEVRALTA
SHLTAVVAHLAGQEALAPVRSEIRSVPDPAIDGDLSDVKGQPRAKRALAIAAAGAHNLLLIGPPGAGKSMLAQRLPGILP
PMTEAEAIEAAKIASVSSAGFDPARFGVRAFRAPHHSASSVALIGGGSNPKPGEISLAHHAVLFLDELPEFDRKVLEALR
EPLENGHITISRAAQQAEFPARFQLIAAMNPSPQGTEIHSLAAQRYRAKLSGPLLDRIDMHLEIPRVSASALSQPADPET
AGSATIREQVVRARAAMLDRQGMPNAFLPPRSLSTVAALSTADQHFLNQALEKLKLSGRARDRILKVARTIADLDQKPQI
DTAALSEAMGYRNLDRLFNGTGAT

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=185427 A9404_RS08830 WP_066100415.1 2013415..2014929(+) (comM) [Halothiobacillus diazotrophicus strain LS2]
ATGTCGATCGCCAAGGTTTTCAGCCGCGCACGCATCGGGATCGACGCACCGCTCATTACCGTCGAAGCGCATGTCAGCAA
TGGCTTGCCGGCCGTCACCCTGGTCGGTCTTCCTGAAACAGCCGTGCGGGAAAGCCGGGATCGCGTCCGTGCGGCCATTC
TTTCCTCCGGCTTCGAGTTCCCACCCCGGCGACTGACGATCAATCTCGCACCCGCCGACCTGCCCAAGGAAGGCGCACGA
TTCGATCTGGCAATTGCCATCGCCATTCTAGCCGTCACCGGTCAAATCCCTCTTACCGAGGGACAGGCATTATCGACGTA
TGAGTTCCTGGGAGAGTTGTCGCTGGATGGCGGCCTTCGTCCGGTTACCGGCGCCCTGCCGGCGGCCATCGGTGCCCGTG
ATCACGAACGAACGCTCGTCATTCCGCCCAGCAGCGCCGCCGAGGTGGCGGTGATCAATGAAGTCCGAGCCCTGACGGCG
TCGCACCTGACGGCCGTCGTGGCGCATCTCGCCGGACAGGAGGCGCTGGCACCCGTGCGCTCCGAGATTCGCAGCGTTCC
GGATCCGGCCATCGATGGCGACCTGTCGGACGTGAAGGGGCAACCACGCGCCAAACGCGCCCTCGCGATCGCTGCGGCCG
GAGCGCACAACCTCCTGCTGATCGGGCCGCCGGGTGCCGGCAAGAGCATGTTGGCTCAACGCCTGCCGGGCATCCTGCCG
CCTATGACCGAGGCCGAGGCCATCGAGGCGGCCAAGATCGCCTCGGTGTCTTCGGCCGGTTTCGATCCCGCACGCTTCGG
TGTTCGCGCGTTCCGCGCCCCACATCATTCGGCCTCTTCGGTGGCCCTGATCGGCGGCGGCTCGAATCCAAAACCCGGCG
AAATTTCCCTGGCTCATCATGCTGTGCTGTTTCTGGATGAGTTGCCGGAGTTCGACCGCAAGGTGCTTGAAGCGCTGCGG
GAGCCTCTGGAGAACGGGCACATCACGATCTCCCGGGCCGCTCAACAGGCCGAGTTTCCGGCCCGGTTCCAGCTGATCGC
CGCCATGAACCCCTCGCCCCAAGGTACGGAAATCCATTCCCTGGCAGCTCAGCGCTACCGGGCAAAGCTTTCCGGCCCGC
TGCTGGACCGGATCGACATGCATCTGGAAATCCCCCGGGTGTCCGCCAGCGCCCTGAGCCAGCCAGCCGACCCGGAAACC
GCCGGCTCCGCGACGATTCGCGAACAGGTGGTCCGGGCGCGCGCGGCGATGCTGGACCGACAGGGCATGCCAAACGCCTT
TCTGCCGCCCCGCAGTCTGTCCACCGTGGCGGCCTTGTCTACAGCGGATCAGCATTTCCTGAATCAGGCGCTGGAAAAGC
TGAAGCTGTCGGGCCGGGCACGGGACCGAATTCTCAAAGTGGCCCGCACCATTGCGGACCTGGATCAGAAACCGCAGATC
GACACGGCAGCCTTAAGCGAGGCCATGGGCTATCGCAATCTGGATCGCCTGTTCAACGGAACAGGGGCGACGTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-390)

Subunit ChlI of Mg-chelatase (ChlI)

(21-143)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A191ZHY3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

52.475

100

0.526
  comM Vibrio campbellii strain DS40M4

51.277

100

0.518
  comM Glaesserella parasuis strain SC1401

50.791

100

0.51
  comM Haemophilus influenzae Rd KW20

50.392

100

0.51
  comM Legionella pneumophila str. Paris

48.111

99.802

0.48
  comM Legionella pneumophila strain ERS1305867

48.111

99.802

0.48
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.117

100

0.458

Multiple sequence alignment