Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   A9Y76_RS01330 Genome accession   NZ_CP016022
Coordinates   268438..269970 (-) Length   510 a.a.
NCBI ID   WP_049286152.1    Uniprot ID   A0A191ZSX7
Organism   Ralstonia insidiosa strain ATCC 49129     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 263438..274970
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A9Y76_RS01300 (A9Y76_01300) - 263508..264077 (+) 570 WP_064801399.1 hypothetical protein -
  A9Y76_RS01305 (A9Y76_01305) - 264103..264930 (-) 828 WP_064801401.1 SDR family NAD(P)-dependent oxidoreductase -
  A9Y76_RS01310 (A9Y76_01310) - 265034..265408 (+) 375 WP_064801403.1 heavy metal-responsive transcriptional regulator -
  A9Y76_RS01315 (A9Y76_01315) - 265707..266348 (+) 642 WP_064801405.1 LysE family transporter -
  A9Y76_RS01320 (A9Y76_01320) - 266352..267779 (-) 1428 WP_064801407.1 MFS transporter -
  A9Y76_RS01325 (A9Y76_01325) - 267944..268441 (+) 498 WP_064801409.1 MarR family winged helix-turn-helix transcriptional regulator -
  A9Y76_RS01330 (A9Y76_01330) comM 268438..269970 (-) 1533 WP_049286152.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  A9Y76_RS01335 (A9Y76_01335) - 270174..270686 (-) 513 WP_021196334.1 hypothetical protein -
  A9Y76_RS01340 (A9Y76_01340) - 270859..271122 (-) 264 WP_021196335.1 accessory factor UbiK family protein -
  A9Y76_RS29675 - 271259..271585 (+) 327 WP_151180504.1 hypothetical protein -
  A9Y76_RS01345 (A9Y76_01345) - 271662..272480 (+) 819 WP_064801411.1 TorF family putative porin -
  A9Y76_RS01350 (A9Y76_01350) - 272546..272884 (+) 339 WP_021196337.1 P-II family nitrogen regulator -
  A9Y76_RS01355 (A9Y76_01355) - 272914..274452 (+) 1539 WP_064496169.1 ammonium transporter -

Sequence

Protein


Download         Length: 510 a.a.        Molecular weight: 54871.64 Da        Isoelectric Point: 7.2359

>NTDB_id=185336 A9Y76_RS01330 WP_049286152.1 268438..269970(-) (comM) [Ralstonia insidiosa strain ATCC 49129]
MSLAVLRSRALSGIDAPAVSVEVHLANGLPSFTIVGLPDTEVKESKDRVRAAIQNSRFEFPARRITVNLAPADLPKESGR
FDLAIALGILAASRQIPHTHLDAHEFAGELSLSGDLRPIRGALAMAYALSRNPASADGETPLTRAFVLPTENAAEAALVS
GTKVLPARTLIEVCDHLSAPDRKLAPALPAPVDADIRYPDLSDVRGQPQARRALEVAAAGGHSMLMIGPPGTGKSMLAQR
FPGLLPDMSDDEALSAAAVMSLTTRGFDAKRWKVRPFRAPHHTASAVAMVGGGNTPRPGEISLAHQGVLFLDELPEFERR
VLEVLREPLETGHITISRAAHQTDFPASFQLIAAMNPCPCGYRGHPLRACRCTPDQVERYQARISGPLLDRIDVQIEVPT
PSQEELLDGPPGEPTVNVAERVSAAHARQLTRQGKRNALLAGHEIDLHCARTDAADGLLRHAMTRFSWSARAYARVLKLA
RTIADLAGDEQIDAVHVGEAIQYRRGVKAD

Nucleotide


Download         Length: 1533 bp        

>NTDB_id=185336 A9Y76_RS01330 WP_049286152.1 268438..269970(-) (comM) [Ralstonia insidiosa strain ATCC 49129]
ATGAGCCTCGCCGTCCTGCGTTCACGCGCGCTTTCCGGCATCGACGCGCCAGCAGTGTCCGTGGAGGTGCATCTGGCCAA
CGGGCTGCCGTCGTTCACCATCGTCGGGTTGCCGGACACCGAGGTGAAGGAGAGCAAGGACCGTGTGCGCGCGGCCATCC
AGAACAGCCGCTTCGAGTTTCCGGCGCGGCGCATCACCGTCAATCTGGCGCCGGCGGATCTGCCGAAAGAGTCCGGGCGA
TTTGATTTGGCGATCGCGTTGGGCATCCTCGCCGCGAGCCGGCAGATCCCGCACACGCATCTGGACGCGCACGAGTTTGC
GGGCGAGTTGTCGCTCTCGGGCGATCTGCGGCCAATTCGCGGTGCGCTGGCGATGGCATATGCACTGTCGCGCAACCCCG
CATCCGCAGATGGCGAAACGCCGCTCACGCGCGCCTTCGTGCTGCCCACTGAGAACGCAGCCGAAGCTGCGCTCGTCAGC
GGTACCAAGGTTCTGCCTGCGCGTACGCTCATCGAGGTGTGCGACCACCTTAGCGCCCCCGACCGCAAACTTGCGCCCGC
ATTGCCTGCGCCGGTCGATGCCGATATCCGCTATCCAGATCTGTCGGACGTGCGCGGCCAGCCGCAGGCGCGGCGCGCAT
TGGAAGTGGCCGCGGCGGGTGGTCATTCGATGCTGATGATCGGCCCGCCCGGTACCGGCAAATCGATGCTCGCGCAACGC
TTTCCCGGCCTGCTGCCCGACATGAGCGATGACGAGGCCCTCTCCGCCGCCGCTGTAATGAGCCTGACCACGCGCGGCTT
CGACGCCAAGCGCTGGAAGGTGCGGCCGTTCCGCGCGCCACATCACACCGCATCGGCGGTGGCGATGGTCGGCGGCGGCA
ATACGCCGAGGCCCGGCGAGATCTCGCTGGCGCACCAGGGGGTGCTCTTCCTGGATGAGCTTCCCGAGTTCGAGCGCCGT
GTTCTCGAGGTCCTGCGCGAGCCGCTGGAGACTGGCCACATCACCATCTCGCGCGCCGCGCACCAGACCGACTTCCCCGC
CAGCTTTCAGTTGATTGCCGCGATGAACCCCTGCCCCTGCGGCTATCGCGGCCATCCGCTGCGCGCGTGCCGCTGCACGC
CAGACCAGGTGGAGCGCTACCAGGCGCGCATCTCCGGCCCGCTGCTCGATCGCATCGACGTGCAGATCGAAGTGCCGACG
CCTTCCCAGGAAGAACTGCTGGACGGCCCGCCGGGCGAACCTACGGTCAACGTGGCCGAGCGCGTGTCAGCTGCACATGC
GCGGCAACTCACGCGCCAAGGCAAGCGCAACGCGCTGCTGGCCGGCCACGAGATCGATCTGCACTGCGCCCGCACGGATG
CCGCCGACGGTCTGCTGCGCCACGCGATGACGCGCTTCTCGTGGTCTGCCCGCGCCTATGCACGCGTGCTCAAGCTCGCC
CGCACCATCGCAGATTTGGCAGGCGACGAGCAGATCGATGCGGTGCACGTGGGTGAGGCGATCCAGTATCGGCGTGGGGT
GAAGGCGGACTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-132)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(200-405)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(413-504)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A191ZSX7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

52.964

99.216

0.525
  comM Vibrio campbellii strain DS40M4

52.475

99.02

0.52
  comM Glaesserella parasuis strain SC1401

50.98

100

0.51
  comM Legionella pneumophila strain ERS1305867

50.784

100

0.508
  comM Legionella pneumophila str. Paris

50.784

100

0.508
  comM Haemophilus influenzae Rd KW20

49.709

100

0.502
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.442

100

0.429

Multiple sequence alignment