Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   ASO12_RS02420 Genome accession   NZ_CP016015
Coordinates   449828..450436 (+) Length   202 a.a.
NCBI ID   WP_003692820.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 32867     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 444828..455436
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ASO12_RS02395 (ASO12_02395) - 445269..445601 (+) 333 WP_003687908.1 hypothetical protein -
  ASO12_RS02400 (ASO12_02400) - 445932..446441 (+) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  ASO12_RS02405 (ASO12_02405) - 446673..447254 (-) 582 WP_047918049.1 superoxide dismutase -
  ASO12_RS02410 (ASO12_02410) dnaB 447417..448823 (+) 1407 WP_003690896.1 replicative DNA helicase -
  ASO12_RS02415 (ASO12_02415) pilH 449131..449796 (+) 666 WP_047918678.1 GspH/FimT family pseudopilin Machinery gene
  ASO12_RS02420 (ASO12_02420) pilV 449828..450436 (+) 609 WP_003692820.1 type IV pilus modification protein PilV Machinery gene
  ASO12_RS02425 (ASO12_02425) pilJ 450433..451377 (+) 945 WP_047916984.1 PilW family protein Machinery gene
  ASO12_RS02430 (ASO12_02430) pilK 451356..451967 (+) 612 WP_047921729.1 pilus assembly PilX family protein Machinery gene
  ASO12_RS02435 (ASO12_02435) pilL 451969..452442 (+) 474 WP_180364901.1 PilX family type IV pilin Machinery gene
  ASO12_RS02440 (ASO12_02440) - 452512..452820 (-) 309 WP_010951048.1 AzlD family protein -
  ASO12_RS13850 - 452817..453524 (-) 708 Protein_456 AzlC family ABC transporter permease -
  ASO12_RS02450 (ASO12_02450) dut 453690..454142 (+) 453 WP_047918679.1 dUTP diphosphatase -
  ASO12_RS02455 (ASO12_02455) dapC 454218..455405 (+) 1188 WP_047918680.1 succinyldiaminopimelate transaminase -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 5.0254

>NTDB_id=185125 ASO12_RS02420 WP_003692820.1 449828..450436(+) (pilV) [Neisseria gonorrhoeae strain 32867]
MKNNDCLRLKNPQSGMALIEVLVAMLVLTIGILALLSVQLRTVASVREAETQTIVSQITQNLMEGMLMNPTIDSDSNKKN
YNLYMRNSIPSAVDGDFKVDAVKSKVQLADEQLKRFGYELKNALPDAVAIHYAVCKDSSGKAPALSGDAFSSNCDNKENG
DTLIKVLWVNDSAGDSDISRTNLEVSGGNIVYTYQARVGGRE

Nucleotide


Download         Length: 609 bp        

>NTDB_id=185125 ASO12_RS02420 WP_003692820.1 449828..450436(+) (pilV) [Neisseria gonorrhoeae strain 32867]
ATGAAGAATAATGATTGCTTGCGCCTGAAAAATCCCCAGTCCGGTATGGCGTTGATAGAAGTCTTGGTCGCTATGCTCGT
TCTGACCATCGGTATTTTGGCATTGCTGTCCGTACAGTTGCGGACAGTCGCTTCCGTCAGGGAGGCGGAAACGCAAACCA
TCGTCAGCCAAATCACGCAAAACCTGATGGAAGGAATGTTGATGAATCCGACCATTGATTCGGACAGCAACAAGAAAAAC
TATAATCTTTACATGAGAAACTCTATACCATCAGCTGTGGATGGCGATTTTAAGGTTGATGCCGTGAAAAGTAAGGTGCA
GTTGGCGGATGAACAATTGAAGAGATTTGGTTATGAGCTGAAAAATGCCTTGCCGGATGCGGTAGCTATTCATTACGCCG
TCTGCAAGGATTCGTCGGGTAAGGCGCCGGCATTGTCCGGCGATGCTTTTTCTTCAAATTGCGACAATAAGGAAAACGGG
GATACTTTAATTAAAGTATTGTGGGTAAATGATTCGGCAGGGGATTCGGATATTTCCCGTACGAATCTTGAGGTGAGCGG
CGGCAATATCGTATATACCTATCAGGCAAGGGTCGGAGGTCGTGAATGA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Neisseria meningitidis 8013

89.806

100

0.916
  pilI Neisseria gonorrhoeae MS11

85.644

100

0.856
  pilV Neisseria gonorrhoeae MS11

85.644

100

0.856

Multiple sequence alignment