Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilJ   Type   Machinery gene
Locus tag   ASO12_RS02425 Genome accession   NZ_CP016015
Coordinates   450433..451377 (+) Length   314 a.a.
NCBI ID   WP_047916984.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 32867     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 445433..456377
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ASO12_RS02400 (ASO12_02400) - 445932..446441 (+) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  ASO12_RS02405 (ASO12_02405) - 446673..447254 (-) 582 WP_047918049.1 superoxide dismutase -
  ASO12_RS02410 (ASO12_02410) dnaB 447417..448823 (+) 1407 WP_003690896.1 replicative DNA helicase -
  ASO12_RS02415 (ASO12_02415) pilH 449131..449796 (+) 666 WP_047918678.1 GspH/FimT family pseudopilin Machinery gene
  ASO12_RS02420 (ASO12_02420) pilV 449828..450436 (+) 609 WP_003692820.1 type IV pilus modification protein PilV Machinery gene
  ASO12_RS02425 (ASO12_02425) pilJ 450433..451377 (+) 945 WP_047916984.1 PilW family protein Machinery gene
  ASO12_RS02430 (ASO12_02430) pilK 451356..451967 (+) 612 WP_047921729.1 pilus assembly PilX family protein Machinery gene
  ASO12_RS02435 (ASO12_02435) pilL 451969..452442 (+) 474 WP_180364901.1 PilX family type IV pilin Machinery gene
  ASO12_RS02440 (ASO12_02440) - 452512..452820 (-) 309 WP_010951048.1 AzlD family protein -
  ASO12_RS13850 - 452817..453524 (-) 708 Protein_456 AzlC family ABC transporter permease -
  ASO12_RS02450 (ASO12_02450) dut 453690..454142 (+) 453 WP_047918679.1 dUTP diphosphatase -
  ASO12_RS02455 (ASO12_02455) dapC 454218..455405 (+) 1188 WP_047918680.1 succinyldiaminopimelate transaminase -

Sequence

Protein


Download         Length: 314 a.a.        Molecular weight: 34489.25 Da        Isoelectric Point: 8.7147

>NTDB_id=185126 ASO12_RS02425 WP_047916984.1 450433..451377(+) (pilJ) [Neisseria gonorrhoeae strain 32867]
MKRKMLNVPKGGYDGMKGFTIVEFLVAGLLSVIVLIAVVSSYFTSRKLNDAANERLAIQQDLRNAATLIVRDARMAGSFG
CFNMSEHIEQDVVSDVTQKNPPFSLKRNSTRNSTNKLIPIAESSNIGYQGFIQRLNALIFQYGIDDVNASAATTVVSSCG
AISKPSKQILTLEDAKKELEILNQDKEQNGNIARQRHVVNAYAVGKIAGEEGLFRFQLDDKGKWGNPQLLAKKVKRMDVR
YIYVSGCPEDEDAGKEEQFKYTDKFDSSVTPAGVEVLLDSGSDAKIAASSDNIIYAYRINATIRGGNVCANRTL

Nucleotide


Download         Length: 945 bp        

>NTDB_id=185126 ASO12_RS02425 WP_047916984.1 450433..451377(+) (pilJ) [Neisseria gonorrhoeae strain 32867]
ATGAAACGTAAAATGCTAAACGTACCAAAAGGCGGTTATGATGGTATGAAGGGTTTTACCATTGTTGAATTTCTGGTTGC
GGGCCTGCTCAGTGTGATTGTCCTGATAGCGGTCGTATCGAGTTACTTTACATCCCGGAAATTAAATGATGCGGCAAACG
AGCGTCTTGCCATTCAACAGGATTTGCGGAATGCGGCAACATTGATTGTCCGCGATGCAAGAATGGCGGGGAGCTTCGGT
TGTTTCAATATGTCCGAGCATATCGAACAGGATGTTGTTTCCGATGTGACGCAAAAAAACCCTCCTTTTTCCTTAAAAAG
GAACAGTACAAGGAACAGTACAAATAAACTTATCCCCATAGCGGAATCTTCAAATATCGGATATCAGGGTTTTATCCAGC
GCCTTAACGCATTGATTTTCCAATACGGAATCGATGATGTTAATGCAAGCGCCGCGACTACCGTCGTCAGCAGCTGTGGC
GCAATATCGAAACCGAGTAAGCAAATCCTTACTTTAGAAGATGCAAAAAAAGAATTGGAGATTCTGAATCAGGATAAGGA
GCAAAATGGCAATATAGCGCGTCAAAGGCATGTGGTCAATGCCTATGCGGTCGGCAAGATTGCCGGTGAGGAAGGTTTGT
TCCGCTTCCAATTGGATGATAAGGGCAAGTGGGGTAATCCTCAGTTGCTCGCGAAAAAGGTTAAACGTATGGATGTGCGG
TATATCTATGTTTCCGGTTGTCCTGAAGATGAAGATGCCGGCAAAGAGGAACAATTCAAATATACGGATAAATTCGACAG
CTCTGTTACGCCTGCCGGGGTGGAGGTTTTATTGGATAGCGGTAGTGATGCCAAGATTGCCGCTTCTTCAGATAATATTA
TTTATGCTTACCGTATCAATGCGACAATACGCGGGGGAAATGTATGCGCAAACAGAACACTTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilJ Neisseria gonorrhoeae MS11

91.401

100

0.914

Multiple sequence alignment