Detailed information NTG0183567

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: B4603_RS08780
• Genome accession: NZ_CP020019
• Coordinates: 1741455..1742459 (-)
• Length: 334 a.a.
• NCBI ID: WP_001005766.1
• Uniprot ID: -
• Organism: Staphylococcus aureus strain 08S00974
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1736455..1747459

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
B4603_RS08765	yajC	1738987..1739247 (-)	261	WP_079219811.1	preprotein translocase subunit YajC	-
B4603_RS08770	tgt	1739266..1740405 (-)	1140	WP_001112045.1	tRNA guanosine(34) transglycosylase Tgt	-
B4603_RS08775	queA	1740428..1741453 (-)	1026	WP_001019177.1	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	-
B4603_RS08780	ruvB	1741455..1742459 (-)	1005	WP_001005766.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
B4603_RS08785	ruvA	1742491..1743093 (-)	603	WP_000271547.1	Holliday junction branch migration protein RuvA	Machinery gene
B4603_RS08790	-	1743107..1743562 (-)	456	WP_000368902.1	ACT domain-containing protein	-
B4603_RS08795	obgE	1743575..1744867 (-)	1293	WP_000496090.1	GTPase ObgE	-
B4603_RS08800	rpmA	1745354..1745638 (-)	285	WP_000916187.1	50S ribosomal protein L27	-
B4603_RS08805	-	1745650..1745970 (-)	321	WP_000633692.1	ribosomal-processing cysteine protease Prp	-
B4603_RS08810	rplU	1745976..1746284 (-)	309	WP_000457386.1	50S ribosomal protein L21	-
B4603_RS08815	mreD	1746771..1747301 (-)	531	WP_001259929.1	rod shape-determining protein MreD	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 37687.98 Da
• Isoelectric Point: 5.0865

>NTDB_id=183567 B4603_RS08780 WP_001005766.1 1741455..1742459(-) (ruvB) [Staphylococcus aureus strain 08S00974]
MNERMVDQSMHSEETDFELSLRPTRLRQYIGQNSIKSNLEVFIKAAKLRHEPLDHVLLFGPPGLGKTTLSNIIANEMEVN
IRTVSGPSLERPGDLAAILSGLQPGDVLFIDEIHRLSSVVEEVLYPAMEDFFLDIIIGKGDEARSIRIDLPPFTLVGATT
RAGSLTGPLRDRFGVHLRLEYYNESDLKEIIIRTAEVLGTGIDEESAIELAKRSRGTPRVANRLLKRVRDFQQVNEDEQI
YIETTKHALGLLQVDQHGLDYIDHKMMNCIIKQYNGGPVGLDAIAVTIGEERITIEDVYEPFLIQKGFLERTPRGRKATP
LAYEHFAKSNEERE

Nucleotide

• Length: 1005 bp

>NTDB_id=183567 B4603_RS08780 WP_001005766.1 1741455..1742459(-) (ruvB) [Staphylococcus aureus strain 08S00974]
ATGAATGAGCGTATGGTTGATCAATCAATGCATAGTGAAGAAACTGATTTCGAATTGTCGCTTAGACCTACGAGATTACG
ACAATATATTGGTCAAAATTCAATAAAAAGTAATTTAGAAGTATTTATTAAAGCGGCTAAACTTCGTCATGAACCATTAG
ATCATGTATTGCTTTTTGGCCCCCCTGGATTAGGTAAGACAACATTATCTAATATTATTGCCAATGAAATGGAAGTAAAT
ATACGTACAGTATCAGGGCCTTCATTAGAAAGACCTGGTGATTTGGCTGCAATTTTATCAGGACTTCAACCTGGAGATGT
TTTGTTTATTGATGAAATACACAGACTGAGTAGTGTTGTTGAAGAAGTGTTATACCCTGCAATGGAAGATTTCTTTTTAG
ATATTATCATTGGTAAAGGCGATGAGGCTAGAAGTATCCGTATCGACTTACCTCCATTCACTTTGGTAGGTGCAACAACT
CGAGCTGGTAGCTTAACAGGTCCACTAAGGGATCGATTTGGTGTGCACTTAAGATTAGAATATTATAATGAATCAGATTT
AAAAGAAATCATTATTAGAACAGCTGAGGTTTTAGGCACAGGTATTGATGAAGAAAGTGCCATTGAACTAGCTAAACGTT
CTAGAGGGACTCCAAGAGTAGCCAATCGACTATTGAAACGGGTAAGAGACTTCCAGCAAGTGAATGAAGATGAACAAATA
TACATTGAAACAACAAAGCACGCATTAGGTTTACTTCAAGTTGATCAACACGGACTAGATTACATTGATCATAAAATGAT
GAACTGTATTATTAAGCAGTATAATGGTGGACCTGTTGGTTTAGATGCGATTGCCGTAACAATTGGCGAAGAACGTATTA
CAATTGAGGACGTTTATGAGCCATTTCTTATTCAGAAAGGCTTTTTAGAACGTACGCCACGTGGCAGAAAAGCAACACCA
TTAGCTTATGAACATTTTGCAAAGTCGAATGAGGAGAGAGAATAA

Domains

Predicted by InterProScan.

• RuvB AAA lid domain (AAA_lid_4) (182-255)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (21-179)

• RuvB C-terminal winged helix domain (WHD_RuvB) (257-326)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Bacillus subtilis subsp. subtilis str. 168	65.644	97.605	0.641
ruvB	Streptococcus pneumoniae TIGR4	57.879	98.802	0.572
ruvB	Streptococcus pneumoniae R6	57.576	98.802	0.569
ruvB	Streptococcus pneumoniae D39	57.576	98.802	0.569
ruvB	Helicobacter pylori 26695	56.173	97.006	0.545
ruvB	Synechocystis sp. PCC 6803	54.062	95.808	0.518