Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   B4603_RS08785 Genome accession   NZ_CP020019
Coordinates   1742491..1743093 (-) Length   200 a.a.
NCBI ID   WP_000271547.1    Uniprot ID   Q2YT88
Organism   Staphylococcus aureus strain 08S00974     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1737491..1748093
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B4603_RS08765 yajC 1738987..1739247 (-) 261 WP_079219811.1 preprotein translocase subunit YajC -
  B4603_RS08770 tgt 1739266..1740405 (-) 1140 WP_001112045.1 tRNA guanosine(34) transglycosylase Tgt -
  B4603_RS08775 queA 1740428..1741453 (-) 1026 WP_001019177.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  B4603_RS08780 ruvB 1741455..1742459 (-) 1005 WP_001005766.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  B4603_RS08785 ruvA 1742491..1743093 (-) 603 WP_000271547.1 Holliday junction branch migration protein RuvA Machinery gene
  B4603_RS08790 - 1743107..1743562 (-) 456 WP_000368902.1 ACT domain-containing protein -
  B4603_RS08795 obgE 1743575..1744867 (-) 1293 WP_000496090.1 GTPase ObgE -
  B4603_RS08800 rpmA 1745354..1745638 (-) 285 WP_000916187.1 50S ribosomal protein L27 -
  B4603_RS08805 - 1745650..1745970 (-) 321 WP_000633692.1 ribosomal-processing cysteine protease Prp -
  B4603_RS08810 rplU 1745976..1746284 (-) 309 WP_000457386.1 50S ribosomal protein L21 -
  B4603_RS08815 mreD 1746771..1747301 (-) 531 WP_001259929.1 rod shape-determining protein MreD -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22262.46 Da        Isoelectric Point: 6.0240

>NTDB_id=183568 B4603_RS08785 WP_000271547.1 1742491..1743093(-) (ruvA) [Staphylococcus aureus strain 08S00974]
MYAYVKGKLTHLYPTHVVVETAGVGYEIQTPNSYRFQKHLDHEVLIHTSLIVREDAQLLYGFSSEEEKDMFLSLIKVTGI
GPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKTARQIVLDLKGKVKITEEDSDSLLQVDATSTVQDQFVQEAML
ALEALGYSKRELAKVEKTLNKNKYDSVDEAVKAGLQLVVS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=183568 B4603_RS08785 WP_000271547.1 1742491..1743093(-) (ruvA) [Staphylococcus aureus strain 08S00974]
ATGTACGCGTATGTCAAAGGTAAGTTAACACATTTATATCCTACACACGTAGTTGTTGAAACTGCTGGTGTTGGTTATGA
AATTCAAACACCAAATTCTTATCGTTTTCAAAAGCATCTAGATCATGAAGTTTTAATTCATACATCTTTAATTGTTCGTG
AAGATGCACAATTATTGTATGGATTTAGTAGTGAAGAAGAGAAAGATATGTTCTTGAGTTTAATTAAAGTTACTGGTATT
GGTCCGAAATCAGCTTTAGCTATTTTAGCGACAAGTACGCCTAATGAAGTAAAGCGTGCCATTGAAAATGAAAATGATAC
GTATTTAACTAAATTCCCAGGAATTGGTAAGAAAACGGCAAGACAGATTGTTTTAGATTTAAAAGGTAAAGTGAAAATCA
CTGAAGAAGATAGCGATTCATTATTACAAGTAGACGCTACATCGACGGTGCAAGATCAATTCGTGCAAGAAGCAATGTTA
GCGTTAGAAGCATTAGGTTATTCTAAACGAGAGCTTGCAAAAGTTGAGAAAACGTTAAATAAAAATAAATATGACTCAGT
TGATGAAGCTGTTAAGGCAGGTCTTCAATTAGTTGTATCTTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-128)

RuvA, C-terminal domain (RuvA_C)

(156-197)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q2YT88

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

46.231

99.5

0.46
  ruvA Streptococcus pneumoniae R6

45.729

99.5

0.455
  ruvA Streptococcus pneumoniae D39

45.729

99.5

0.455
  ruvA Bacillus subtilis subsp. subtilis str. 168

42.714

99.5

0.425