Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   LLUC109_RS08605 Genome accession   NZ_CP015907
Coordinates   1706509..1707780 (-) Length   423 a.a.
NCBI ID   WP_324187032.1    Uniprot ID   -
Organism   Lactococcus cremoris strain UC109     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1701509..1712780
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLUC109_RS08570 (LLUC109_1653) atpF 1701972..1702478 (-) 507 WP_010906128.1 F0F1 ATP synthase subunit B -
  LLUC109_RS08575 (LLUC109_1654) atpB 1702493..1703206 (-) 714 WP_015082746.1 F0F1 ATP synthase subunit A -
  LLUC109_RS08580 (LLUC109_1655) - 1703253..1703468 (-) 216 WP_014572212.1 F0F1 ATP synthase subunit C -
  LLUC109_RS08585 (LLUC109_1656) - 1703651..1704427 (-) 777 WP_014572211.1 alpha/beta hydrolase family protein -
  LLUC109_RS08590 (LLUC109_1657) - 1704711..1705015 (-) 305 Protein_1670 ComEC/Rec2 family competence protein -
  LLUC109_RS08595 (LLUC109_1658) - 1705036..1705926 (-) 891 WP_318175638.1 IS982-like element IS982B family transposase -
  LLUC109_RS08600 (LLUC109_02940) comEC 1706003..1706512 (-) 510 WP_228764033.1 MBL fold metallo-hydrolase Machinery gene
  LLUC109_RS08605 (LLUC109_1659) comEC 1706509..1707780 (-) 1272 WP_324187032.1 ComEC/Rec2 family competence protein Machinery gene
  LLUC109_RS08610 (LLUC109_02945) comEA 1707908..1708009 (-) 102 WP_228764031.1 helix-hairpin-helix domain-containing protein Machinery gene
  LLUC109_RS08615 (LLUC109_02950) comEA 1708006..1708488 (-) 483 WP_237025447.1 SLBB domain-containing protein Machinery gene
  LLUC109_RS08620 (LLUC109_1661) - 1708619..1709980 (-) 1362 WP_014572203.1 ABC transporter permease -
  LLUC109_RS08625 (LLUC109_1662) - 1709977..1710909 (-) 933 WP_014572202.1 ABC transporter ATP-binding protein -
  LLUC109_RS08630 (LLUC109_1663) - 1711015..1711413 (-) 399 WP_011676775.1 hypothetical protein -
  LLUC109_RS08635 (LLUC109_1664) - 1711530..1712089 (-) 560 Protein_1679 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 49044.21 Da        Isoelectric Point: 9.7194

>NTDB_id=183325 LLUC109_RS08605 WP_324187032.1 1706509..1707780(-) (comEC) [Lactococcus cremoris strain UC109]
MIPILIVFAVFFLLINSLSIRDNENQPKNLSKIELIPDTIQVNGDLLSFQGRMNGQKYQVYDTLKSLKEKGFYQNLSQNC
QLSFTGNLEIPETQRNFNGFDDQKYLTSQNIYRQITIQQITNVEIKKNFDLHTLRRKAIVWTQNHFPKPMSDYMTGLLFG
FLSKDFNQMSDIYSSLGIIHLFALSGMQVNFFIDWFRKILLRMGLTRERVNLVQIPFSIFYAFMTGLSVSVLRALFQKNI
RLTSLDNIAVTTLVLMLISPKFLLTTGGQLTLFYAFVISMLNHPFSNLNGLKKVLTESSVLSLCVLPLLIFDFHIFQPLS
ILLTIIFGFLFDFMLLPLLLCCFLISFLGFLLNLNYIFQILEWLVYKVDLPLHYPFVLGKPSSLELIILFVLIGLFVDSF
SHKKRRFFLIGFIFLFFSSLKIQ

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=183325 LLUC109_RS08605 WP_324187032.1 1706509..1707780(-) (comEC) [Lactococcus cremoris strain UC109]
ATGATTCCGATATTAATTGTTTTTGCTGTATTTTTTCTGTTAATCAATAGTCTTAGTATTAGGGATAATGAAAATCAACC
AAAAAATCTCTCAAAAATTGAATTAATTCCAGATACAATCCAAGTCAATGGTGATTTATTGAGTTTTCAGGGGAGAATGA
ATGGACAAAAATATCAAGTCTATGACACATTGAAAAGTCTAAAAGAGAAAGGGTTTTATCAGAACTTAAGTCAAAATTGT
CAGTTAAGTTTCACAGGAAACCTTGAAATACCAGAAACTCAGCGAAATTTTAATGGTTTTGATGACCAAAAATATTTAAC
TAGTCAAAATATCTATCGACAGATTACCATCCAACAAATTACAAATGTGGAAATAAAAAAGAATTTTGACCTTCATACTT
TAAGGCGAAAGGCAATTGTTTGGACACAAAATCATTTTCCAAAACCGATGAGTGACTATATGACAGGTTTGCTTTTTGGC
TTTTTAAGTAAGGATTTTAATCAGATGAGCGATATTTATAGCTCTTTAGGAATTATTCATCTTTTTGCTCTATCAGGAAT
GCAAGTAAATTTTTTTATTGATTGGTTTCGTAAAATACTTCTTCGCATGGGACTGACGAGAGAAAGAGTGAATCTTGTTC
AAATTCCATTTTCTATTTTTTATGCTTTTATGACGGGATTATCGGTTTCAGTTTTAAGAGCCCTTTTTCAAAAAAATATT
CGTCTGACTTCTTTGGATAATATCGCAGTTACGACATTAGTTTTGATGCTCATAAGTCCAAAATTTTTACTGACGACTGG
TGGTCAGCTTACCTTGTTTTATGCTTTTGTCATTTCGATGCTTAATCATCCTTTTTCTAATTTAAATGGATTGAAAAAAG
TGCTGACAGAATCATCAGTCCTTTCACTTTGTGTTCTTCCGTTACTCATCTTTGATTTCCATATTTTTCAGCCTCTTTCA
ATATTATTAACAATTATATTTGGTTTTCTTTTTGATTTTATGTTGCTCCCGCTGCTTTTATGCTGTTTTCTTATATCATT
TTTGGGATTTTTGCTCAATTTAAATTATATTTTTCAAATTCTAGAATGGCTAGTTTATAAAGTTGATTTACCCTTACATT
ACCCCTTTGTTTTGGGGAAACCTAGTTCACTCGAATTAATTATTCTATTTGTGTTAATTGGTTTATTCGTAGATTCATTT
TCTCATAAAAAAAGGAGATTTTTTTTAATTGGATTTATATTTTTATTTTTTTCATCACTAAAAATCCAATGA

Domains

Predicted by InterProScan.

Competence protein (Competence)

(157-397)

Domain of unknown function (DUF4131) (DUF4131)

(56-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Lactococcus lactis subsp. cremoris KW2

96.882

98.582

0.955
  comEC/celB Streptococcus mitis SK321

46.512

91.489

0.426
  comEC/celB Streptococcus mitis NCTC 12261

45.995

91.489

0.421
  comEC/celB Streptococcus pneumoniae TIGR4

45.995

91.489

0.421
  comEC/celB Streptococcus pneumoniae Rx1

45.22

91.489

0.414
  comEC/celB Streptococcus pneumoniae D39

45.22

91.489

0.414
  comEC/celB Streptococcus pneumoniae R6

45.22

91.489

0.414

Multiple sequence alignment