Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   LLUC063_RS08525 Genome accession   NZ_CP015905
Coordinates   1737422..1738981 (-) Length   519 a.a.
NCBI ID   WP_345893333.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain UC063     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1732422..1743981
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLUC063_RS08495 (LLUC063_1668) atpA 1732465..1733967 (-) 1503 WP_004255265.1 F0F1 ATP synthase subunit alpha -
  LLUC063_RS08500 (LLUC063_1669) - 1734154..1734681 (-) 528 WP_058221760.1 F0F1 ATP synthase subunit delta -
  LLUC063_RS08505 (LLUC063_1670) atpF 1734683..1735189 (-) 507 WP_058221761.1 F0F1 ATP synthase subunit B -
  LLUC063_RS08510 (LLUC063_1671) atpB 1735204..1735917 (-) 714 WP_004255255.1 F0F1 ATP synthase subunit A -
  LLUC063_RS08515 (LLUC063_1672) - 1735962..1736177 (-) 216 WP_004255250.1 F0F1 ATP synthase subunit C -
  LLUC063_RS08520 (LLUC063_1673) - 1736361..1737137 (-) 777 WP_004255244.1 alpha/beta hydrolase family protein -
  LLUC063_RS08525 (LLUC063_1674) comEC 1737422..1738981 (-) 1560 WP_345893333.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LLUC063_RS08530 (LLUC063_1675) comEC 1738999..1739532 (-) 534 WP_235589824.1 ComEC/Rec2 family competence protein Machinery gene
  LLUC063_RS08535 (LLUC063_1676) comEA 1739622..1740269 (-) 648 WP_058225668.1 ComEA family DNA-binding protein Machinery gene
  LLUC063_RS08540 (LLUC063_1677) - 1740329..1741690 (-) 1362 WP_021214597.1 ABC transporter permease -
  LLUC063_RS08545 (LLUC063_1678) - 1741687..1742619 (-) 933 WP_004255238.1 ABC transporter ATP-binding protein -
  LLUC063_RS08550 (LLUC063_1679) - 1742724..1743122 (-) 399 WP_004255236.1 hypothetical protein -
  LLUC063_RS08555 (LLUC063_1680) - 1743226..1743789 (-) 564 WP_004255233.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 519 a.a.        Molecular weight: 59061.40 Da        Isoelectric Point: 9.6973

>NTDB_id=183226 LLUC063_RS08525 WP_345893333.1 1737422..1738981(-) (comEC) [Lactococcus lactis subsp. lactis strain UC063]
MGDIYSSLGIIHLFALLGMQVNFFIDWFRRIILRLGITREKLNIWQIPFSIFYAFMTGFSVSVLRALFQKNIRLNPLDNL
AVTTFLLMIVSPKFLLTTGGQLTLFYAFVISMINHKISELKGIRKLLTESSVISLSVLPLLILDFHIFQPFSILLTIGFG
FLFDVILLPLLLGTFLLSLIGYNFNINHIFQILEWLIHEVDLPLHYPLVLGNPRPIELLILFFLIGLLIDNLFKKRRQII
FAGLIVCSFFICKNPVYPSITAVDIGQGDSIFLQDKFNKKTILIDTGGRLALPQESWQKPQSQTNAEKTLIPYLESVGVS
QNDQLILTHTDADHVGDFLNLADKIKIKEIWVSPGELTNNHFVEKLKKANIAIHISKVGDKIPIFDSALQVLSNGYTGKG
DNNDSIVTYGNFYHTKFLFTGDLEQEGEKELLKNYPKLKVDVLKVGHHGSKTSSNPDFIKEINPKLALISVGEKNRYGHP
NQETLETLKKNQIRILRTDQKGALKLMQINQQWRIQTVR

Nucleotide


Download         Length: 1560 bp        

>NTDB_id=183226 LLUC063_RS08525 WP_345893333.1 1737422..1738981(-) (comEC) [Lactococcus lactis subsp. lactis strain UC063]
ATAGGAGACATTTACAGTTCATTAGGAATTATTCATCTTTTTGCCTTATTGGGAATGCAAGTTAATTTTTTCATTGATTG
GTTTCGTAGAATTATTCTTCGACTAGGAATAACGAGAGAAAAATTAAATATTTGGCAAATTCCCTTTTCAATTTTTTATG
CATTTATGACAGGATTTTCGGTTTCAGTATTACGAGCTTTATTTCAAAAAAATATTCGTCTAAATCCTTTAGATAACCTA
GCAGTGACAACCTTTCTTCTGATGATTGTCAGTCCTAAATTTTTACTGACAACAGGAGGACAACTAACTTTATTTTATGC
TTTTGTCATTTCAATGATTAATCATAAAATTTCAGAACTAAAAGGAATAAGAAAATTACTGACAGAATCATCAGTGATTT
CTTTGAGTGTTTTACCTTTACTCATTTTGGATTTTCATATCTTTCAGCCTTTTTCAATTTTACTGACGATTGGCTTTGGC
TTTTTATTTGATGTAATCTTATTGCCTTTACTATTAGGAACTTTTCTCTTGTCTCTAATTGGCTATAATTTTAATATAAA
TCATATTTTTCAAATTCTAGAATGGCTAATTCATGAGGTTGATTTACCCTTACATTATCCTTTGGTTTTAGGGAATCCCC
GGCCAATTGAATTATTAATCTTATTTTTCCTAATCGGTTTGTTAATTGATAATCTCTTTAAGAAAAGAAGACAAATAATT
TTTGCTGGCCTAATTGTTTGTAGTTTTTTTATTTGTAAAAATCCAGTTTACCCCAGTATCACAGCAGTTGATATTGGCCA
AGGGGATAGTATTTTTTTGCAAGATAAATTTAATAAAAAAACAATTTTGATTGATACAGGCGGACGATTAGCCCTTCCGC
AAGAAAGTTGGCAAAAACCTCAAAGTCAAACAAATGCCGAAAAAACACTCATTCCATATCTTGAATCTGTTGGAGTAAGT
CAAAACGACCAGCTCATTTTGACGCATACGGACGCTGACCATGTTGGAGATTTTTTGAATTTAGCTGATAAAATAAAAAT
AAAAGAAATTTGGGTTAGCCCCGGTGAACTGACAAATAATCATTTTGTAGAAAAATTGAAGAAAGCAAATATTGCGATTC
ACATCAGTAAAGTTGGAGATAAAATTCCAATCTTTGATAGTGCTTTACAAGTTTTATCAAATGGTTATACAGGAAAAGGG
GATAATAATGATTCTATCGTGACTTATGGAAATTTTTATCATACAAAATTTCTATTTACAGGGGATTTAGAACAAGAAGG
AGAAAAAGAACTGCTCAAGAATTATCCTAAATTGAAAGTTGATGTCTTAAAAGTAGGTCATCATGGCAGTAAAACAAGTT
CAAACCCTGACTTTATTAAAGAAATTAATCCCAAACTTGCCCTCATTTCGGTTGGAGAGAAAAATCGATATGGACATCCC
AATCAAGAAACTTTAGAAACATTAAAAAAAAACCAAATCAGAATACTGAGAACCGATCAAAAGGGAGCGCTTAAACTAAT
GCAAATCAATCAACAGTGGCGAATCCAAACAGTTAGATAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(3-229)

Metallo-beta-lactamase superfamily (Lactamase_B)

(266-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Lactococcus lactis subsp. cremoris KW2

78.035

100

0.78
  comEC/celB Streptococcus mitis NCTC 12261

46.463

100

0.468
  comEC/celB Streptococcus mitis SK321

46.374

100

0.468
  comEC/celB Streptococcus pneumoniae TIGR4

45.42

100

0.459
  comEC/celB Streptococcus pneumoniae Rx1

44.847

100

0.453
  comEC/celB Streptococcus pneumoniae D39

44.847

100

0.453
  comEC/celB Streptococcus pneumoniae R6

44.847

100

0.453

Multiple sequence alignment