Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilL   Type   Machinery gene
Locus tag   AT729_RS08300 Genome accession   NZ_CP015886
Coordinates   1456011..1456508 (-) Length   165 a.a.
NCBI ID   WP_002249143.1    Uniprot ID   -
Organism   Neisseria meningitidis strain 38277     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1451011..1461508
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AT729_RS08275 (AT729_01389) dut 1452154..1452606 (-) 453 WP_002222651.1 dUTP diphosphatase -
  AT729_RS08280 (AT729_01390) - 1452751..1453179 (+) 429 Protein_1393 AzlC family ABC transporter permease -
  AT729_RS08290 - 1453857..1454608 (+) 752 WP_195182867.1 IS5-like element IS1301 family transposase -
  AT729_RS08295 - 1454986..1455737 (+) 752 WP_096001759.1 IS5-like element IS1301 family transposase -
  AT729_RS08300 (AT729_01395) pilL 1456011..1456508 (-) 498 WP_002249143.1 PilX family type IV pilin Machinery gene
  AT729_RS08305 (AT729_01396) pilK 1456513..1457106 (-) 594 WP_002249142.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  AT729_RS08310 (AT729_01397) pilJ 1457085..1458074 (-) 990 WP_079889516.1 PilW family protein Machinery gene
  AT729_RS08315 (AT729_01398) pilV 1458071..1458694 (-) 624 WP_079889657.1 type IV pilus modification protein PilV Machinery gene
  AT729_RS08320 (AT729_01399) pilH 1458727..1459392 (-) 666 WP_079889517.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  AT729_RS08325 (AT729_01400) dnaB 1459701..1461107 (-) 1407 WP_002219448.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18212.06 Da        Isoelectric Point: 9.7629

>NTDB_id=182789 AT729_RS08300 WP_002249143.1 1456011..1456508(-) (pilL) [Neisseria meningitidis strain 38277]
MEQKGFTLIEMMIVVAILGIISVIAIPSYQSYIEKGYQSQLYTEMVGINNTVKQIILKNPQDSNDILNIKLTKFVSGYKM
NPKIAEKYSVSGEFVDAPKSRANRALKSRAYRLVGVPKAGTGYTLSVWMNSVGDGYKCRDAASAQAHLETLSSDVGCEAF
SNRKK

Nucleotide


Download         Length: 498 bp        

>NTDB_id=182789 AT729_RS08300 WP_002249143.1 1456011..1456508(-) (pilL) [Neisseria meningitidis strain 38277]
ATGGAACAAAAAGGGTTTACATTGATTGAGATGATGATAGTCGTCGCGATACTCGGCATCATCAGCGTCATTGCCATACC
TTCTTATCAAAGTTATATTGAAAAAGGCTATCAGTCCCAGCTTTATACGGAGATGGTCGGTATCAACAATACTGTCAAAC
AGATTATTTTGAAAAATCCACAGGATAGTAATGATATCCTCAATATAAAACTGACAAAGTTTGTCTCAGGCTATAAGATG
AATCCGAAAATTGCCGAAAAATATAGTGTTTCGGGGGAATTTGTCGATGCGCCAAAATCAAGGGCAAACAGGGCGTTAAA
ATCAAGGGCATACAGGTTGGTCGGCGTTCCGAAGGCGGGGACGGGTTATACTTTGTCGGTATGGATGAACAGCGTGGGCG
ACGGATACAAATGCCGTGATGCCGCTTCTGCCCAAGCCCATTTGGAGACCTTGTCCTCAGATGTCGGCTGTGAAGCCTTC
TCTAATCGTAAAAAATAG

Domains

Predicted by InterProScan.

Minor type IV pilin, PilX (Pilin_PilX)

(31-165)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilL Neisseria gonorrhoeae MS11

83.03

100

0.83
  pilX Neisseria meningitidis 8013

81.818

100

0.818

Multiple sequence alignment