Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   AT729_RS08320 Genome accession   NZ_CP015886
Coordinates   1458727..1459392 (-) Length   221 a.a.
NCBI ID   WP_079889517.1    Uniprot ID   -
Organism   Neisseria meningitidis strain 38277     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1453727..1464392
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AT729_RS08290 - 1453857..1454608 (+) 752 WP_195182867.1 IS5-like element IS1301 family transposase -
  AT729_RS08295 - 1454986..1455737 (+) 752 WP_096001759.1 IS5-like element IS1301 family transposase -
  AT729_RS08300 (AT729_01395) pilL 1456011..1456508 (-) 498 WP_002249143.1 PilX family type IV pilin Machinery gene
  AT729_RS08305 (AT729_01396) pilK 1456513..1457106 (-) 594 WP_002249142.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  AT729_RS08310 (AT729_01397) pilJ 1457085..1458074 (-) 990 WP_079889516.1 PilW family protein Machinery gene
  AT729_RS08315 (AT729_01398) pilV 1458071..1458694 (-) 624 WP_079889657.1 type IV pilus modification protein PilV Machinery gene
  AT729_RS08320 (AT729_01399) pilH 1458727..1459392 (-) 666 WP_079889517.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  AT729_RS08325 (AT729_01400) dnaB 1459701..1461107 (-) 1407 WP_002219448.1 replicative DNA helicase -
  AT729_RS08335 (AT729_01401) - 1461270..1461857 (+) 588 WP_002220670.1 superoxide dismutase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 24767.35 Da        Isoelectric Point: 9.8043

>NTDB_id=182793 AT729_RS08320 WP_079889517.1 1458727..1459392(-) (pilH) [Neisseria meningitidis strain 38277]
MCTRKQQGFTLTELLIVMVIAAIMAMIALPNMSQWIASRRIASHAERIANLLRFSRGEAVRLNLPVYICLVQVKKDGTPN
NKCDSGKKGQGMLAFGDKNGNKGYDNDTADVLLRSVVLNDDINDKRINYAFNHIAFGQTQPTADRVVWTFNQNGTFGYTK
DRHLTKQSSFFYSDGYIQIVLTDARAVSDADKKFRSAVVLIDSSGRVEVCPRNDRRAVCQH

Nucleotide


Download         Length: 666 bp        

>NTDB_id=182793 AT729_RS08320 WP_079889517.1 1458727..1459392(-) (pilH) [Neisseria meningitidis strain 38277]
ATGTGTACACGAAAACAACAAGGTTTCACGCTAACAGAGCTGCTCATCGTGATGGTCATTGCAGCCATTATGGCGATGAT
AGCCCTCCCCAATATGAGCCAATGGATTGCATCCCGCCGCATTGCCAGTCACGCGGAGCGGATTGCCAACCTTTTGCGTT
TCTCCAGGGGCGAAGCCGTCCGGCTCAATCTCCCTGTCTATATCTGTCTTGTTCAAGTTAAAAAAGACGGTACGCCCAAC
AATAAATGTGACTCCGGCAAGAAGGGGCAGGGAATGTTGGCTTTCGGCGACAAAAACGGCAATAAGGGATATGACAATGA
TACGGCGGATGTTCTTCTCCGCAGTGTGGTATTGAATGATGATATCAATGATAAGCGGATTAATTATGCCTTCAACCATA
TCGCTTTCGGTCAAACGCAACCGACCGCCGACCGCGTTGTTTGGACGTTCAATCAAAATGGGACGTTTGGTTATACGAAA
GACCGGCATCTTACAAAACAATCCAGCTTTTTTTACTCCGACGGTTATATCCAAATCGTGCTGACAGATGCGAGAGCAGT
TTCAGATGCCGATAAGAAATTCCGTTCGGCGGTGGTTTTGATTGATAGCAGCGGCAGGGTCGAAGTTTGCCCTAGAAACG
ATAGACGTGCCGTATGCCAACATTAA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)

Type II transport protein GspH (GspH)

(44-205)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

84.615

100

0.846

Multiple sequence alignment