Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilJ   Type   Machinery gene
Locus tag   AT729_RS08310 Genome accession   NZ_CP015886
Coordinates   1457085..1458074 (-) Length   329 a.a.
NCBI ID   WP_079889516.1    Uniprot ID   -
Organism   Neisseria meningitidis strain 38277     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1452085..1463074
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AT729_RS08275 (AT729_01389) dut 1452154..1452606 (-) 453 WP_002222651.1 dUTP diphosphatase -
  AT729_RS08280 (AT729_01390) - 1452751..1453179 (+) 429 Protein_1393 AzlC family ABC transporter permease -
  AT729_RS08290 - 1453857..1454608 (+) 752 WP_195182867.1 IS5-like element IS1301 family transposase -
  AT729_RS08295 - 1454986..1455737 (+) 752 WP_096001759.1 IS5-like element IS1301 family transposase -
  AT729_RS08300 (AT729_01395) pilL 1456011..1456508 (-) 498 WP_002249143.1 PilX family type IV pilin Machinery gene
  AT729_RS08305 (AT729_01396) pilK 1456513..1457106 (-) 594 WP_002249142.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  AT729_RS08310 (AT729_01397) pilJ 1457085..1458074 (-) 990 WP_079889516.1 PilW family protein Machinery gene
  AT729_RS08315 (AT729_01398) pilV 1458071..1458694 (-) 624 WP_079889657.1 type IV pilus modification protein PilV Machinery gene
  AT729_RS08320 (AT729_01399) pilH 1458727..1459392 (-) 666 WP_079889517.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  AT729_RS08325 (AT729_01400) dnaB 1459701..1461107 (-) 1407 WP_002219448.1 replicative DNA helicase -
  AT729_RS08335 (AT729_01401) - 1461270..1461857 (+) 588 WP_002220670.1 superoxide dismutase -

Sequence

Protein


Download         Length: 329 a.a.        Molecular weight: 36287.29 Da        Isoelectric Point: 8.6995

>NTDB_id=182791 AT729_RS08310 WP_079889516.1 1457085..1458074(-) (pilJ) [Neisseria meningitidis strain 38277]
MRRKMLNVPKGNYDGMKGFTIIEFLVAGMLSMIVLMAVGSSYFTSRKLNDAANERLAIQQDLRNAATLIVRDARMAGSFG
CFNMSEHIGSDVVSDVAQKNPLFSLKKRNSTNKLIPITESLNIEYPGFTQRLNALIFQYGIDDVNASADTTVVSSCAKIA
KPGKKISTLQEAKSALQITNDDKQNGNITRQRHVVNAYAVGRIADEEGLFRFQLNDDGQWGNPQLLVKKINKMDIRYIYL
LVENPGIPPTNSPRYIYGCPEDDDAGKEEKFKYTGTFDSFTNAVTPAGVEVLLSSGTDTKIAASSDNHIYAYRIDATIRG
GNVCANRTL

Nucleotide


Download         Length: 990 bp        

>NTDB_id=182791 AT729_RS08310 WP_079889516.1 1457085..1458074(-) (pilJ) [Neisseria meningitidis strain 38277]
ATGAGACGTAAAATGCTAAACGTACCAAAAGGCAATTATGATGGTATGAAGGGTTTTACCATTATTGAATTTTTGGTTGC
GGGCATGCTCAGTATGATTGTCCTGATGGCGGTCGGATCGAGTTACTTCACGTCCCGGAAATTAAATGATGCGGCAAACG
AGCGTCTTGCTATTCAACAGGATTTGCGGAATGCGGCAACATTAATTGTCCGCGATGCAAGAATGGCGGGGAGCTTCGGT
TGTTTCAATATGTCTGAGCATATCGGAAGTGATGTTGTTTCCGATGTGGCGCAAAAAAACCCTCTTTTTTCCTTAAAAAA
AAGGAACAGTACAAATAAACTTATCCCCATAACGGAATCTTTAAATATCGAATATCCGGGTTTTACCCAGCGCCTTAACG
CATTGATTTTCCAATACGGAATCGATGATGTTAATGCAAGCGCCGATACTACCGTCGTCAGCAGCTGTGCCAAAATAGCA
AAACCGGGTAAGAAAATATCTACCTTGCAAGAAGCAAAGAGTGCATTACAGATTACTAATGATGATAAACAAAATGGAAA
TATCACCCGTCAAAGGCATGTGGTCAATGCCTATGCGGTCGGCAGGATTGCCGATGAGGAAGGTTTGTTCCGCTTCCAAT
TGAATGATGATGGGCAGTGGGGCAATCCTCAGTTGTTGGTTAAAAAGATTAATAAAATGGATATACGGTATATCTATCTT
CTCGTGGAAAATCCTGGTATACCGCCTACCAATTCTCCCCGGTATATTTACGGTTGCCCTGAAGATGACGATGCCGGCAA
AGAGGAAAAATTCAAATATACGGGTACATTCGACAGCTTCACAAATGCTGTTACGCCCGCCGGGGTGGAGGTTTTATTGA
GTAGCGGTACTGATACCAAGATTGCCGCTTCTTCAGACAATCATATTTATGCTTACCGTATCGATGCGACAATACGCGGG
GGAAATGTATGCGCAAACAGAACACTTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilJ Neisseria gonorrhoeae MS11

75.904

100

0.766

Multiple sequence alignment