Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   A9C11_RS30670 Genome accession   NZ_CP015878
Coordinates   7041944..7043431 (+) Length   495 a.a.
NCBI ID   WP_064584854.1    Uniprot ID   A0A1A9KKM0
Organism   Pseudomonas citronellolis strain SJTE-3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 7036944..7048431
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A9C11_RS30650 (A9C11_30630) - 7037116..7038450 (-) 1335 WP_009614064.1 ammonium transporter -
  A9C11_RS30655 (A9C11_30635) glnK 7038486..7038824 (-) 339 WP_003457590.1 P-II family nitrogen regulator -
  A9C11_RS30660 (A9C11_30640) - 7039368..7041398 (+) 2031 WP_064584853.1 acyltransferase family protein -
  A9C11_RS30665 (A9C11_30645) - 7041491..7041757 (+) 267 WP_009614069.1 accessory factor UbiK family protein -
  A9C11_RS30670 (A9C11_30650) comM 7041944..7043431 (+) 1488 WP_064584854.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  A9C11_RS30675 (A9C11_30655) - 7043435..7043665 (-) 231 WP_058488049.1 DUF1127 domain-containing protein -
  A9C11_RS30680 (A9C11_30660) - 7043840..7045291 (+) 1452 WP_043268158.1 PLP-dependent aminotransferase family protein -
  A9C11_RS30685 (A9C11_30665) - 7045626..7046438 (+) 813 WP_064584855.1 TlpA disulfide reductase family protein -
  A9C11_RS30690 (A9C11_30670) - 7046464..7047639 (-) 1176 WP_082936893.1 acyltransferase family protein -
  A9C11_RS30695 (A9C11_30675) - 7048061..7048282 (-) 222 WP_064584857.1 hypothetical protein -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 52194.87 Da        Isoelectric Point: 7.9978

>NTDB_id=182716 A9C11_RS30670 WP_064584854.1 7041944..7043431(+) (comM) [Pseudomonas citronellolis strain SJTE-3]
MSLAIVHSRAQVGVEAPGVTVEAHLANGLPSLTLVGLPETAVKESKDRVRSAILNSGFEFPARRITLNLAPADLPKDGGR
FDLAIALGLLAANGQLAGASLDGLECLGELALSGALRPVQGVLPAALAARAAGRALVVPKENAEEASLASGLTVYAVGHL
LELAAHLTGQTPLAPYQARGLLRETPPYPDLAEVQGQAAAKRALLVAAAGSHNLLLSGPPGTGKTLLASRLPGLLPPLSE
DEALQVAAIHSVSGRGPLTHWPQRPFRQPHHSASAAALVGGGSRPQPGEITLAHEGVLFLDELPEFDRKVLEVLREPLEG
GEIVIARANGRVRFPARFQLVAAMNPCPCGYLGDPSGRCRCTPEQIQRYRAKLSGPLLDRIDLHLTVGRETTRLVPQSGS
LGSAEVAAQVASARERQLARQGCANAVLDLKSMHHNCALSNQDQTWLETAGERLDLSLRALHRILKVARTLADLEGAERI
ARSHLAEALQYRAGH

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=182716 A9C11_RS30670 WP_064584854.1 7041944..7043431(+) (comM) [Pseudomonas citronellolis strain SJTE-3]
ATGTCCCTGGCCATCGTCCACAGCCGCGCCCAGGTCGGCGTCGAGGCTCCCGGCGTCACCGTCGAGGCGCACCTGGCCAA
CGGCCTGCCGTCGCTGACCCTGGTCGGCCTGCCGGAAACCGCGGTCAAGGAAAGCAAGGACCGCGTGCGCAGCGCCATCC
TCAATTCCGGCTTCGAATTCCCCGCCCGACGCATCACCCTCAACCTCGCCCCGGCCGACCTGCCCAAGGACGGCGGACGC
TTCGACCTGGCCATCGCCCTGGGCCTGCTCGCCGCCAACGGCCAGTTGGCCGGCGCCAGCCTGGACGGCCTCGAATGCCT
CGGTGAACTGGCCCTGTCCGGCGCCCTGCGCCCGGTGCAGGGCGTGCTACCGGCGGCCCTGGCGGCGCGCGCGGCCGGCC
GCGCCCTGGTGGTGCCGAAGGAGAATGCCGAGGAAGCAAGCCTGGCCAGCGGCCTGACCGTCTACGCCGTCGGCCACCTG
CTGGAACTGGCCGCGCACCTGACCGGCCAGACACCCCTGGCGCCCTACCAGGCCCGCGGCCTGCTGCGGGAAACCCCGCC
CTACCCCGACCTCGCCGAGGTCCAGGGCCAGGCCGCGGCCAAGCGCGCCCTGCTGGTGGCCGCGGCCGGGTCGCACAACC
TGCTGCTGAGCGGTCCGCCGGGCACCGGCAAGACGCTGCTGGCCAGCCGCCTGCCGGGGTTGCTGCCGCCGCTGAGCGAA
GACGAGGCGCTGCAGGTGGCGGCCATCCACTCCGTGTCCGGGCGCGGGCCGCTGACGCACTGGCCGCAGCGCCCGTTCCG
CCAGCCGCACCACAGCGCCTCGGCTGCCGCGCTGGTGGGCGGCGGCAGCCGGCCGCAACCCGGGGAGATCACCCTGGCCC
ACGAAGGCGTGCTGTTCCTCGACGAGTTGCCGGAATTCGACCGCAAGGTCCTGGAAGTCCTCCGCGAGCCCCTGGAAGGG
GGAGAAATCGTGATCGCCCGGGCCAACGGCCGGGTGCGCTTCCCGGCGCGCTTCCAACTGGTGGCGGCGATGAACCCCTG
CCCCTGCGGCTACCTGGGCGACCCCAGCGGCCGCTGCCGTTGCACCCCGGAGCAGATCCAGCGCTACCGCGCCAAGCTCT
CCGGCCCGCTGCTGGACCGCATCGACCTGCACCTGACCGTTGGCCGCGAGACCACGCGTCTCGTCCCTCAGAGTGGCAGC
CTGGGCAGCGCCGAGGTCGCCGCGCAGGTGGCCAGCGCCCGCGAGCGGCAACTGGCGCGGCAGGGTTGCGCGAACGCCGT
TCTCGACCTCAAGTCGATGCACCATAATTGTGCACTGAGCAACCAGGACCAGACCTGGCTGGAAACCGCAGGCGAGCGCC
TGGACCTGTCCCTGCGCGCCCTGCACCGCATCCTCAAGGTCGCCCGCACCCTGGCCGACCTGGAAGGCGCCGAACGCATC
GCCCGCTCGCACCTGGCCGAGGCCCTGCAATACCGCGCCGGGCACTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1A9KKM0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.855

100

0.57
  comM Vibrio campbellii strain DS40M4

56.855

100

0.57
  comM Haemophilus influenzae Rd KW20

54.813

100

0.564
  comM Glaesserella parasuis strain SC1401

53.36

100

0.545
  comM Legionella pneumophila str. Paris

49.901

100

0.509
  comM Legionella pneumophila strain ERS1305867

49.901

100

0.509
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.322

100

0.471

Multiple sequence alignment