Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   A214_RS06220 Genome accession   NZ_CP015877
Coordinates   1327268..1328761 (-) Length   497 a.a.
NCBI ID   WP_003098248.1    Uniprot ID   Q9HTR4
Organism   Pseudomonas aeruginosa SJTD-1     
Function   require for natural transformation (predicted from homology)   
Unclear

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 1305497..1340162 1327268..1328761 within 0


Gene organization within MGE regions


Location: 1305497..1340162
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A214_RS06140 (A214_06140) - 1307907..1308098 (+) 192 WP_003096523.1 YnbE family lipoprotein -
  A214_RS06145 (A214_06145) - 1308111..1308455 (+) 345 WP_003098276.1 YdbL family protein -
  A214_RS06150 (A214_06150) dadA 1308812..1310110 (+) 1299 WP_003098274.1 D-amino acid dehydrogenase -
  A214_RS06155 (A214_06155) - 1310085..1310438 (+) 354 WP_003098273.1 RidA family protein -
  A214_RS06160 (A214_06160) alr 1310529..1311602 (+) 1074 WP_003096515.1 alanine racemase -
  A214_RS06165 (A214_06165) - 1311753..1312301 (+) 549 WP_003096513.1 cupin domain-containing protein -
  A214_RS06170 (A214_06170) - 1312505..1312933 (+) 429 WP_003096511.1 c-type cytochrome -
  A214_RS06175 (A214_06175) - 1313143..1315002 (+) 1860 WP_003123719.1 acetyl-CoA hydrolase/transferase C-terminal domain-containing protein -
  A214_RS06180 (A214_06180) - 1315010..1315582 (-) 573 WP_003110452.1 xanthine phosphoribosyltransferase -
  A214_RS06185 (A214_06185) - 1315746..1317464 (-) 1719 WP_003098265.1 thiamine pyrophosphate-dependent enzyme -
  A214_RS06190 (A214_06190) rep 1317598..1319607 (-) 2010 WP_003110454.1 DNA helicase Rep -
  A214_RS06195 (A214_06195) - 1319795..1321471 (+) 1677 WP_003121292.1 putative bifunctional diguanylate cyclase/phosphodiesterase -
  A214_RS06200 (A214_06200) - 1321383..1322849 (-) 1467 WP_003457845.1 NorM family multidrug efflux MATE transporter -
  A214_RS06205 (A214_06205) - 1322998..1323915 (+) 918 WP_017148676.1 LysR substrate-binding domain-containing protein -
  A214_RS06210 (A214_06210) pchP 1324066..1325115 (+) 1050 WP_003110458.1 phosphorylcholine phosphatase -
  A214_RS06215 (A214_06215) betT 1325158..1327143 (-) 1986 WP_003096496.1 choline BCCT transporter BetT -
  A214_RS06220 (A214_06220) comM 1327268..1328761 (-) 1494 WP_003098248.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  A214_RS06225 (A214_06225) - 1328802..1329062 (-) 261 WP_003096478.1 accessory factor UbiK family protein -
  A214_RS06230 (A214_06230) glnK 1329502..1329840 (+) 339 WP_003096476.1 P-II family nitrogen regulator -
  A214_RS06235 (A214_06235) - 1329880..1331208 (+) 1329 WP_003109815.1 ammonium transporter -
  A214_RS29535 (A214_06240) - 1331298..1331531 (+) 234 WP_257784338.1 hypothetical protein -
  A214_RS06245 (A214_06245) - 1331792..1332217 (+) 426 WP_003096441.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  A214_RS06250 (A214_06250) sutA 1332295..1332612 (+) 318 WP_003098240.1 transcriptional regulator SutA -
  A214_RS06255 (A214_06255) - 1333027..1333941 (+) 915 WP_003118059.1 fimbrial protein -
  A214_RS06260 (A214_06260) - 1333966..1335342 (-) 1377 WP_003118058.1 PLP-dependent aminotransferase family protein -
  A214_RS06265 (A214_06265) - 1335505..1336674 (+) 1170 WP_003118057.1 MFS transporter -
  A214_RS06270 (A214_06270) - 1336704..1337402 (-) 699 WP_003118056.1 HAD family hydrolase -
  A214_RS06275 (A214_06275) xerC 1337399..1338310 (-) 912 WP_003114345.1 tyrosine recombinase XerC -
  A214_RS06280 (A214_06280) - 1338330..1339031 (-) 702 WP_003096433.1 DUF484 family protein -
  A214_RS06285 (A214_06285) dapF 1339062..1339892 (-) 831 WP_003098223.1 diaminopimelate epimerase -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 53083.04 Da        Isoelectric Point: 7.9587

>NTDB_id=182660 A214_RS06220 WP_003098248.1 1327268..1328761(-) (comM) [Pseudomonas aeruginosa SJTD-1]
MSLAIVHSRAQVGVEAPCVSVEAHLANGLPSLTLVGLPETAVRESKDRVRSALLNAGFDFPARRITLNLAPADLPKDGGR
FDLAIALGILAASGQLPGTALDGLECLGELALSGAIRPVRGVLPAALAARDARRVLVVPKENAEEASLASGLTVFAVDHL
LEIAGHLSGQAPLPPYQARGLLRAPFPYPDLAEVQGQAAAKRALLVAAAGAHNLLLSGPPGTGKTLLASRLPGLLPALDE
DEALEVAAIHSVASHVPLRHWPQRPFRQPHHSASAPALVGGGSRPQPGEITLAHQGVLFLDELPEFERKVLEVLREPLES
GEIVIARANGRVRFPARFQLVAAMNPCPCGYLGDPSGRCRCTPEQVQRYRGKLSGPLLDRIDLHVSVLRESTSLQPGHGE
TATAEVSERVGAARQRQLARQGCANAHLDLQAMHRNCALAEADRRWLEAAGERLELSLRALHRILKVARTLADLERIDAI
ERRHLAEALQYRAMTST

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=182660 A214_RS06220 WP_003098248.1 1327268..1328761(-) (comM) [Pseudomonas aeruginosa SJTD-1]
ATGTCCCTGGCGATTGTCCACAGCCGAGCCCAGGTCGGCGTCGAAGCCCCCTGCGTCAGCGTCGAGGCGCACCTGGCCAA
CGGCCTGCCTTCGCTGACCCTGGTCGGCCTGCCGGAAACCGCGGTGCGCGAGAGCAAGGACCGCGTGCGCAGCGCCCTGC
TCAATGCCGGTTTCGACTTCCCCGCGCGGCGCATCACCCTCAACCTCGCCCCCGCCGACCTGCCCAAGGACGGCGGTCGC
TTCGACCTGGCCATCGCACTCGGCATCCTCGCCGCCAGCGGCCAGTTGCCCGGCACCGCCCTCGACGGCCTGGAGTGCCT
CGGCGAACTGGCCCTGTCCGGGGCGATCCGGCCAGTGCGAGGCGTATTGCCGGCCGCGCTGGCGGCGCGCGACGCAAGGC
GCGTTCTGGTGGTACCGAAGGAAAATGCCGAAGAGGCCAGCCTGGCCAGCGGGCTGACGGTGTTCGCCGTGGACCACCTG
CTGGAGATCGCCGGACACCTCTCCGGCCAGGCCCCGCTGCCGCCCTACCAGGCCCGCGGCCTGCTCCGCGCGCCCTTCCC
TTATCCAGACCTGGCCGAGGTCCAGGGCCAGGCCGCCGCCAAGCGCGCCCTGCTGGTGGCCGCCGCCGGCGCGCACAACC
TGTTGCTCAGCGGCCCGCCGGGCACCGGCAAGACCCTCCTGGCCAGCCGCCTGCCCGGCCTGCTGCCGGCGCTCGACGAG
GACGAAGCCCTGGAGGTCGCGGCGATCCATTCGGTGGCCAGCCACGTCCCCCTCAGGCACTGGCCGCAGCGACCGTTCCG
CCAGCCGCACCACTCCGCCTCCGCGCCGGCCCTGGTCGGCGGCGGCAGCCGCCCGCAGCCGGGCGAGATCACCCTGGCGC
ACCAGGGCGTGCTGTTCCTCGACGAACTGCCGGAGTTCGAGCGCAAGGTCCTGGAGGTCCTGCGCGAGCCGCTGGAAAGC
GGCGAGATCGTCATTGCCCGGGCCAACGGCCGGGTACGTTTCCCGGCGCGCTTCCAACTGGTGGCGGCGATGAATCCCTG
TCCCTGTGGCTACCTCGGCGATCCCAGTGGCCGCTGCCGCTGCACCCCGGAACAGGTCCAGCGCTACCGGGGCAAGCTGT
CCGGACCGCTGCTCGATCGCATCGACCTGCACGTCAGCGTGCTCCGCGAAAGCACCAGCCTGCAGCCAGGACACGGCGAA
ACCGCTACCGCCGAGGTCAGCGAACGGGTGGGCGCCGCACGGCAACGGCAACTGGCCCGCCAGGGCTGCGCCAATGCCCA
TCTCGATCTCCAGGCGATGCACCGCAATTGTGCACTCGCCGAAGCGGACCGCCGCTGGCTGGAGGCTGCCGGAGAGCGCC
TGGAACTTTCCTTGCGCGCCTTGCATCGCATACTCAAGGTGGCCCGGACGCTGGCCGACCTGGAGCGCATCGATGCCATC
GAACGCCGGCACCTGGCGGAAGCCCTGCAGTATCGGGCAATGACCTCCACGTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9HTR4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

55.186

100

0.567
  comM Vibrio campbellii strain DS40M4

56.74

100

0.567
  comM Vibrio cholerae strain A1552

56.338

100

0.563
  comM Glaesserella parasuis strain SC1401

55.179

100

0.557
  comM Legionella pneumophila str. Paris

50.1

100

0.503
  comM Legionella pneumophila strain ERS1305867

50.1

100

0.503
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.866

100

0.469

Multiple sequence alignment