Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   A8140_RS14120 Genome accession   NZ_CP015863
Coordinates   2937385..2937918 (-) Length   177 a.a.
NCBI ID   WP_005533786.1    Uniprot ID   -
Organism   Vibrio campbellii CAIM 519 = NBRC 15631 = ATCC 25920 strain ATCC 25920 CAIM 519T     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2932385..2942918
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A8140_RS14100 (A8140_13445) - 2932699..2933028 (-) 330 WP_005533781.1 hypothetical protein -
  A8140_RS14105 (A8140_13450) gspM 2933021..2933671 (-) 651 WP_005533782.1 type II secretion system protein GspM -
  A8140_RS14110 (A8140_13455) - 2933668..2935116 (-) 1449 WP_005533783.1 hypothetical protein -
  A8140_RS14115 (A8140_13460) csrD 2935128..2937137 (-) 2010 WP_005533785.1 RNase E specificity factor CsrD -
  A8140_RS14120 (A8140_13465) ssb 2937385..2937918 (-) 534 WP_005533786.1 single-stranded DNA-binding protein Machinery gene
  A8140_RS14125 (A8140_13470) qstR 2938212..2938856 (+) 645 WP_005533788.1 LuxR C-terminal-related transcriptional regulator Regulator
  A8140_RS14130 (A8140_13475) galU 2939020..2939892 (+) 873 WP_005432802.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  A8140_RS14135 (A8140_13480) uvrA 2940031..2942853 (+) 2823 WP_038862597.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 19646.71 Da        Isoelectric Point: 4.9269

>NTDB_id=182603 A8140_RS14120 WP_005533786.1 2937385..2937918(-) (ssb) [Vibrio campbellii CAIM 519 = NBRC 15631 = ATCC 25920 strain ATCC 25920 CAIM 519T]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYV
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGAPMGGGQPQQQQQQGGWGQPQQPAQQQYNAPQQQAPQQP
QQQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=182603 A8140_RS14120 WP_005533786.1 2937385..2937918(-) (ssb) [Vibrio campbellii CAIM 519 = NBRC 15631 = ATCC 25920 strain ATCC 25920 CAIM 519T]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCTAATGG
CGGTGCAGTAGCAAACATCACGATTGCAACTTCTGAGTCATGGCGTGATAAAGCGACTGGCGAACAGCGCGAAAAAACAG
AATGGCACCGTGTTGTGCTGTTTGGCAAACTTGCTGAAGTAGCAGGTGAGTACCTACGTAAAGGTTCTCAAGTTTACGTT
GAAGGTCAACTTCAAACTCGTAAATGGCAAGACCAAAGTGGCCAAGACCGCTACTCAACAGAAGTGGTTGTTCAAGGCTT
CAATGGCGTAATGCAAATGCTTGGTGGCCGTGCTCAAGGTGGCGCACCAATGGGTGGTGGTCAGCCTCAACAGCAGCAGC
AACAAGGTGGTTGGGGTCAACCTCAACAACCAGCTCAGCAGCAATATAATGCTCCTCAGCAACAGGCTCCGCAGCAACCT
CAGCAGCAATACAACGAGCCACCAATGGATTTCGACGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

81.564

100

0.825
  ssb Glaesserella parasuis strain SC1401

56.771

100

0.616
  ssb Neisseria meningitidis MC58

48.045

100

0.486
  ssb Neisseria gonorrhoeae MS11

48.045

100

0.486

Multiple sequence alignment