Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   A8140_RS14125 Genome accession   NZ_CP015863
Coordinates   2938212..2938856 (+) Length   214 a.a.
NCBI ID   WP_005533788.1    Uniprot ID   -
Organism   Vibrio campbellii CAIM 519 = NBRC 15631 = ATCC 25920 strain ATCC 25920 CAIM 519T     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2933212..2943856
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A8140_RS14110 (A8140_13455) - 2933668..2935116 (-) 1449 WP_005533783.1 hypothetical protein -
  A8140_RS14115 (A8140_13460) csrD 2935128..2937137 (-) 2010 WP_005533785.1 RNase E specificity factor CsrD -
  A8140_RS14120 (A8140_13465) ssb 2937385..2937918 (-) 534 WP_005533786.1 single-stranded DNA-binding protein Machinery gene
  A8140_RS14125 (A8140_13470) qstR 2938212..2938856 (+) 645 WP_005533788.1 LuxR C-terminal-related transcriptional regulator Regulator
  A8140_RS14130 (A8140_13475) galU 2939020..2939892 (+) 873 WP_005432802.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  A8140_RS14135 (A8140_13480) uvrA 2940031..2942853 (+) 2823 WP_038862597.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24576.55 Da        Isoelectric Point: 9.1805

>NTDB_id=182604 A8140_RS14125 WP_005533788.1 2938212..2938856(+) (qstR) [Vibrio campbellii CAIM 519 = NBRC 15631 = ATCC 25920 strain ATCC 25920 CAIM 519T]
MKKSAYARKLFLISMEEDAGKKVEALEKYTDIDIPVISTQALMEANPKYRNKILLIDFSEHKELVLSIKNLPLIWKNFET
VVFNVPKRLTTDELLAFGQLKGIFYEKSSLEQIGEGLKEIINGQNWLPRNVTSQLLHYYRNVISTHTAPATVDLTIRELQ
VLRCLQAGASNNQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLMS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=182604 A8140_RS14125 WP_005533788.1 2938212..2938856(+) (qstR) [Vibrio campbellii CAIM 519 = NBRC 15631 = ATCC 25920 strain ATCC 25920 CAIM 519T]
GTGAAAAAATCGGCTTATGCGAGAAAACTTTTTCTAATCAGCATGGAAGAGGATGCAGGGAAAAAGGTCGAAGCTCTGGA
GAAGTATACAGATATCGACATCCCCGTCATTTCGACCCAAGCACTGATGGAAGCAAACCCGAAGTACCGCAATAAAATCT
TGCTTATCGACTTCAGTGAACACAAAGAGTTGGTTCTATCGATAAAAAACCTTCCTCTGATTTGGAAGAATTTCGAAACA
GTCGTGTTCAACGTTCCTAAACGTTTGACGACAGATGAGCTATTGGCGTTTGGTCAATTGAAAGGCATCTTCTACGAAAA
GAGTTCTCTTGAGCAGATTGGCGAAGGGTTAAAGGAAATCATTAATGGTCAAAACTGGCTGCCTCGTAATGTCACCAGTC
AACTTCTCCATTATTATCGTAACGTCATTAGTACCCACACCGCTCCTGCCACCGTCGATTTGACCATTCGTGAACTGCAA
GTACTTCGCTGCCTGCAAGCTGGCGCATCAAACAATCAAATGGCCGAAGAGTTATTCGTGAGCGAATTCACTATAAAGTC
TCACCTGTATCAGATTTTTAAGAAGCTTTCGGTCAAAAACCGTGTACAAGCGATTGCTTGGGCTGACCAAAACCTGATGT
CATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio campbellii strain DS40M4

99.065

100

0.991
  qstR Vibrio parahaemolyticus RIMD 2210633

88.318

100

0.883
  qstR Vibrio cholerae strain A1552

52.336

100

0.523

Multiple sequence alignment