Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   A8L59_RS25845 Genome accession   NZ_CP015852
Coordinates   5747826..5749319 (+) Length   497 a.a.
NCBI ID   WP_064589793.1    Uniprot ID   A0AAC9FZL3
Organism   Pseudomonas koreensis strain CRS05-R5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5742826..5754319
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A8L59_RS25820 (A8L59_25790) - 5743075..5744412 (-) 1338 WP_064589789.1 ammonium transporter -
  A8L59_RS25825 (A8L59_25795) glnK 5744451..5744789 (-) 339 WP_002555808.1 P-II family nitrogen regulator -
  A8L59_RS25830 (A8L59_25800) - 5745203..5745463 (+) 261 WP_064589790.1 accessory factor UbiK family protein -
  A8L59_RS25835 (A8L59_25805) - 5745821..5746348 (+) 528 WP_064589791.1 Bro-N domain-containing protein -
  A8L59_RS25840 (A8L59_25810) - 5746996..5747448 (+) 453 WP_335703436.1 N-acetyltransferase -
  A8L59_RS27785 - 5747483..5747653 (+) 171 WP_171057229.1 hypothetical protein -
  A8L59_RS25845 (A8L59_25815) comM 5747826..5749319 (+) 1494 WP_064589793.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  A8L59_RS25850 (A8L59_25820) - 5749678..5750850 (+) 1173 WP_064589794.1 hypothetical protein -
  A8L59_RS25855 (A8L59_25825) - 5750923..5751465 (+) 543 WP_064589795.1 adenylyl-sulfate kinase -
  A8L59_RS25860 (A8L59_25830) - 5751468..5752217 (+) 750 WP_064589796.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 53043.10 Da        Isoelectric Point: 7.8476

>NTDB_id=182516 A8L59_RS25845 WP_064589793.1 5747826..5749319(+) (comM) [Pseudomonas koreensis strain CRS05-R5]
MSLSIVHSRAQIGVEAPAVTVEVHLANGLPSLTMVGLPEAAVKESKDRVRSAIINSGLQFPARRITLNLAPADLPKDGGR
FDLAIALGILSASVQVPCLTLDEVECLGELALSGAVRAVRGVLPAALAARKAGRALVVPRANAEEACLASGLKVFAVDHL
LEAVAHFNGHTPVEPYVSDGLIHAARPYPDLSEVQGQMAAKRALLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLSE
CEALEVAAIQSVASGVPLTHWPQRPFRQPHHSASGPALVGGSSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPLES
GHIVIARAKDRVRFPARFQLVAAMNPCPCGYLGEPSGKCSCTPDMVQRYRNKLSGPLLDRIDLHLTVAREATALNPAVQP
GEDSASAAALVAEARERQQKRQGCANAFLDLPGLRRHCKLSTTDENWLESACERLTLSLRSAHRLLKVARTLADLGQEEN
VRREHLAEALQYRPATQ

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=182516 A8L59_RS25845 WP_064589793.1 5747826..5749319(+) (comM) [Pseudomonas koreensis strain CRS05-R5]
ATGTCTCTCTCCATCGTCCACAGTCGCGCCCAGATTGGCGTGGAAGCCCCCGCTGTCACCGTCGAAGTCCATCTGGCCAA
TGGCCTGCCGTCGCTGACCATGGTCGGCCTGCCCGAGGCGGCGGTAAAGGAGAGCAAGGATCGGGTGCGCAGCGCGATCA
TCAATTCCGGGCTGCAGTTTCCGGCGCGGCGGATCACTTTGAATCTGGCGCCGGCGGACCTGCCCAAGGATGGCGGACGG
TTTGATCTGGCGATTGCCTTGGGGATTCTGTCGGCGAGTGTGCAGGTTCCGTGTCTGACGCTGGATGAGGTGGAATGCCT
CGGTGAGTTGGCGTTGTCCGGCGCCGTACGAGCGGTGCGCGGAGTGTTGCCGGCGGCACTGGCGGCGCGCAAGGCGGGTC
GGGCGCTGGTGGTGCCGCGGGCGAATGCCGAGGAGGCCTGCCTGGCTTCGGGGTTGAAGGTGTTTGCGGTGGATCATCTG
CTGGAAGCGGTGGCACATTTCAACGGGCACACGCCCGTGGAGCCTTATGTATCGGACGGCTTGATTCATGCCGCCAGACC
CTATCCCGATCTCAGCGAAGTGCAGGGGCAAATGGCAGCCAAACGTGCGCTGCTGATCGCGGCGGCGGGCGCACACAACC
TGTTGTTCAGCGGGCCGCCGGGAACGGGCAAGACATTGTTGGCCAGTCGATTGCCGGGACTGCTCCCGCCATTGTCCGAA
TGCGAAGCACTGGAGGTGGCCGCCATTCAATCCGTCGCCAGCGGCGTGCCGTTGACCCATTGGCCGCAACGTCCTTTTCG
CCAGCCACACCACTCGGCATCAGGCCCGGCACTGGTTGGCGGCAGTTCGAAACCGCAACCCGGCGAAATCACCCTGGCCC
ATCACGGCGTGCTGTTTCTCGATGAGCTGCCGGAGTTTGATCGCAAGGTGCTGGAGGTGCTGCGCGAGCCGCTGGAGTCC
GGGCATATCGTAATCGCCCGAGCCAAGGATCGCGTGCGCTTTCCGGCGCGCTTCCAGTTGGTGGCGGCGATGAATCCGTG
TCCCTGTGGATATCTGGGTGAACCAAGTGGCAAGTGTTCGTGCACGCCGGACATGGTTCAGCGTTATCGCAACAAGCTGT
CGGGCCCCCTCTTGGACCGGATCGACTTACACCTGACGGTGGCGCGGGAGGCAACGGCGCTGAACCCTGCGGTCCAGCCA
GGGGAAGACAGCGCCAGTGCCGCCGCGCTGGTAGCCGAGGCCCGAGAGCGACAACAGAAACGTCAGGGATGTGCCAATGC
GTTTCTTGATCTGCCGGGGCTGCGTCGCCACTGCAAGTTATCCACAACCGACGAGAACTGGCTGGAATCGGCGTGTGAAC
GGCTGACTTTGTCGCTGCGCTCGGCGCATCGACTTCTCAAGGTCGCCAGGACGTTGGCCGATCTGGGGCAGGAAGAAAAC
GTCCGACGCGAGCACTTGGCAGAGGCGTTGCAGTATCGGCCGGCAACACAGTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.545

99.598

0.543
  comM Vibrio campbellii strain DS40M4

53.939

99.598

0.537
  comM Glaesserella parasuis strain SC1401

53.2

100

0.535
  comM Haemophilus influenzae Rd KW20

53

100

0.533
  comM Legionella pneumophila str. Paris

50.803

100

0.509
  comM Legionella pneumophila strain ERS1305867

50.803

100

0.509
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.491

100

0.457

Multiple sequence alignment