Detailed information NTG0182445

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: AOZ05_RS09090
• Genome accession: NZ_CP019945
• Coordinates: 1763163..1764167 (-)
• Length: 334 a.a.
• NCBI ID: WP_001005767.1
• Uniprot ID: Q6GG63
• Organism: Staphylococcus aureus strain BA01611
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1758163..1769167

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AOZ05_RS09075	yajC	1760695..1760955 (-)	261	WP_001160682.1	preprotein translocase subunit YajC	-
AOZ05_RS09080	tgt	1760974..1762113 (-)	1140	WP_001112045.1	tRNA guanosine(34) transglycosylase Tgt	-
AOZ05_RS09085	queA	1762136..1763161 (-)	1026	WP_001019178.1	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	-
AOZ05_RS09090	ruvB	1763163..1764167 (-)	1005	WP_001005767.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
AOZ05_RS09095	ruvA	1764199..1764801 (-)	603	WP_000271547.1	Holliday junction branch migration protein RuvA	Machinery gene
AOZ05_RS09100	-	1764815..1765270 (-)	456	WP_000368903.1	ACT domain-containing protein	-
AOZ05_RS09105	obgE	1765283..1766575 (-)	1293	WP_000496100.1	GTPase ObgE	-
AOZ05_RS09110	rpmA	1767059..1767343 (-)	285	WP_000916187.1	50S ribosomal protein L27	-
AOZ05_RS09115	-	1767355..1767675 (-)	321	WP_000633692.1	ribosomal-processing cysteine protease Prp	-
AOZ05_RS09120	rplU	1767681..1767989 (-)	309	WP_000457386.1	50S ribosomal protein L21	-
AOZ05_RS09125	mreD	1768225..1768755 (-)	531	WP_031590453.1	rod shape-determining protein MreD	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 37718.00 Da
• Isoelectric Point: 5.0865

>NTDB_id=182445 AOZ05_RS09090 WP_001005767.1 1763163..1764167(-) (ruvB) [Staphylococcus aureus strain BA01611]
MNERMVDQSMHSEETDFELSLRPTRLRQYIGQNSIKSNLEVFIKAAKLRHEPLDHVLLFGPPGLGKTTLSNIIANEMEVN
IRTVSGPSLERPGDLAAILSGLQPGDVLFIDEIHRLSSVVEEVLYPAMEDFFLDIIIGKGDEARSIRIDLPPFTLVGATT
RAGSLTGPLRDRFGVHLRLEYYNESDLKEIIIRTAEVLGTGIDEESAIELAKRSRGTPRVANRLLKRVRDFQQVNEDEQI
YIETTKHALGLLQVDQHGLDYIDHKMMNCIIKQYNGGPVGLDTIAVTIGEERITIEDVYEPFLIQKGFLERTPRGRKATP
LAYEHFAKSNEERE

Nucleotide

• Length: 1005 bp

>NTDB_id=182445 AOZ05_RS09090 WP_001005767.1 1763163..1764167(-) (ruvB) [Staphylococcus aureus strain BA01611]
ATGAATGAGCGTATGGTTGATCAATCAATGCATAGTGAAGAAACTGATTTCGAATTGTCGCTTAGACCTACGAGATTACG
ACAATATATTGGTCAAAATTCAATAAAAAGTAATTTAGAAGTATTTATTAAAGCGGCTAAACTTCGTCATGAACCATTAG
ATCATGTATTGCTTTTTGGCCCCCCTGGATTAGGTAAGACAACATTATCTAATATCATTGCCAATGAAATGGAAGTTAAT
ATACGTACAGTATCAGGGCCTTCATTAGAAAGACCTGGTGATTTGGCTGCAATTTTATCAGGACTTCAACCTGGAGATGT
TTTGTTTATTGATGAAATACACAGACTGAGTAGTGTTGTTGAAGAAGTGTTATACCCTGCAATGGAAGATTTCTTTTTAG
ATATTATCATTGGTAAAGGCGATGAGGCTAGAAGTATCCGTATCGACTTACCTCCATTCACTTTGGTAGGTGCAACAACG
CGAGCTGGCAGCTTAACAGGTCCACTAAGGGATCGATTTGGTGTGCACTTAAGATTAGAATATTATAATGAATCAGATTT
AAAAGAAATCATTATTAGAACAGCTGAGGTTTTAGGCACAGGTATTGATGAAGAAAGTGCCATTGAACTTGCTAAACGTT
CTAGAGGGACTCCAAGAGTAGCAAATCGACTATTGAAGCGGGTAAGAGACTTCCAGCAAGTGAATGAAGATGAACAAATA
TACATTGAAACAACGAAGCACGCATTAGGTTTACTTCAAGTTGATCAACACGGACTAGATTACATTGATCATAAAATGAT
GAACTGTATTATTAAGCAGTATAATGGTGGACCTGTTGGTTTAGATACGATTGCCGTAACAATTGGTGAAGAACGTATTA
CAATTGAGGACGTTTATGAGCCATTTCTTATTCAGAAAGGCTTTTTAGAACGTACGCCACGTGGCAGAAAAGCAACACCA
TTAGCTTATGAACATTTTGCAAAGTCGAATGAGGAGAGAGAATAA

Domains

Predicted by InterProScan.

• RuvB AAA lid domain (AAA_lid_4) (182-255)

• RuvB C-terminal winged helix domain (WHD_RuvB) (257-326)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (21-179)

3D structure

• AlphaFold DB: Q6GG63

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Bacillus subtilis subsp. subtilis str. 168	65.951	97.605	0.644
ruvB	Streptococcus pneumoniae TIGR4	58.182	98.802	0.575
ruvB	Streptococcus pneumoniae R6	57.879	98.802	0.572
ruvB	Streptococcus pneumoniae D39	57.879	98.802	0.572
ruvB	Helicobacter pylori 26695	56.481	97.006	0.548
ruvB	Synechocystis sp. PCC 6803	53.75	95.808	0.515