Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   AOZ05_RS09095 Genome accession   NZ_CP019945
Coordinates   1764199..1764801 (-) Length   200 a.a.
NCBI ID   WP_000271547.1    Uniprot ID   Q2YT88
Organism   Staphylococcus aureus strain BA01611     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1759199..1769801
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOZ05_RS09075 yajC 1760695..1760955 (-) 261 WP_001160682.1 preprotein translocase subunit YajC -
  AOZ05_RS09080 tgt 1760974..1762113 (-) 1140 WP_001112045.1 tRNA guanosine(34) transglycosylase Tgt -
  AOZ05_RS09085 queA 1762136..1763161 (-) 1026 WP_001019178.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  AOZ05_RS09090 ruvB 1763163..1764167 (-) 1005 WP_001005767.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  AOZ05_RS09095 ruvA 1764199..1764801 (-) 603 WP_000271547.1 Holliday junction branch migration protein RuvA Machinery gene
  AOZ05_RS09100 - 1764815..1765270 (-) 456 WP_000368903.1 ACT domain-containing protein -
  AOZ05_RS09105 obgE 1765283..1766575 (-) 1293 WP_000496100.1 GTPase ObgE -
  AOZ05_RS09110 rpmA 1767059..1767343 (-) 285 WP_000916187.1 50S ribosomal protein L27 -
  AOZ05_RS09115 - 1767355..1767675 (-) 321 WP_000633692.1 ribosomal-processing cysteine protease Prp -
  AOZ05_RS09120 rplU 1767681..1767989 (-) 309 WP_000457386.1 50S ribosomal protein L21 -
  AOZ05_RS09125 mreD 1768225..1768755 (-) 531 WP_031590453.1 rod shape-determining protein MreD -
  AOZ05_RS09130 mreC 1768755..1769597 (-) 843 WP_000911041.1 rod shape-determining protein MreC -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22262.46 Da        Isoelectric Point: 6.0240

>NTDB_id=182446 AOZ05_RS09095 WP_000271547.1 1764199..1764801(-) (ruvA) [Staphylococcus aureus strain BA01611]
MYAYVKGKLTHLYPTHVVVETAGVGYEIQTPNSYRFQKHLDHEVLIHTSLIVREDAQLLYGFSSEEEKDMFLSLIKVTGI
GPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKTARQIVLDLKGKVKITEEDSDSLLQVDATSTVQDQFVQEAML
ALEALGYSKRELAKVEKTLNKNKYDSVDEAVKAGLQLVVS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=182446 AOZ05_RS09095 WP_000271547.1 1764199..1764801(-) (ruvA) [Staphylococcus aureus strain BA01611]
ATGTACGCGTATGTCAAAGGTAAGTTAACACATTTATATCCTACACACGTAGTTGTTGAAACTGCTGGTGTTGGTTATGA
AATTCAAACACCAAATTCTTATCGTTTTCAAAAGCATCTAGATCATGAAGTTTTAATTCATACATCTTTAATTGTTCGTG
AAGATGCACAATTATTGTATGGATTTAGTAGTGAAGAAGAGAAAGATATGTTCTTGAGTTTAATTAAAGTTACTGGTATT
GGTCCGAAATCAGCTTTAGCTATTTTAGCGACAAGTACGCCTAATGAAGTAAAACGTGCCATTGAAAATGAAAATGATAC
GTATTTAACTAAATTCCCAGGAATTGGTAAGAAAACGGCAAGACAGATTGTCTTAGATTTAAAAGGTAAAGTGAAAATTA
CTGAAGAAGATAGCGATTCATTATTACAAGTAGACGCTACTTCGACGGTGCAAGATCAATTCGTGCAAGAAGCAATGTTA
GCGTTAGAAGCATTAGGTTATTCTAAACGAGAGCTTGCAAAAGTTGAGAAAACGTTAAATAAAAATAAATATGACTCAGT
TGATGAAGCTGTTAAGGCAGGTCTTCAATTAGTTGTATCTTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-128)

RuvA, C-terminal domain (RuvA_C)

(156-197)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q2YT88

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

46.231

99.5

0.46
  ruvA Streptococcus pneumoniae R6

45.729

99.5

0.455
  ruvA Streptococcus pneumoniae D39

45.729

99.5

0.455
  ruvA Bacillus subtilis subsp. subtilis str. 168

42.714

99.5

0.425