Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   A8C75_RS00585 Genome accession   NZ_CP015839
Coordinates   128351..129874 (+) Length   507 a.a.
NCBI ID   WP_067376614.1    Uniprot ID   A0A1A9ETA7
Organism   Marinobacterium aestuarii strain ST58-10     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 123351..134874
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A8C75_RS00560 (A8C75_00560) - 124020..124823 (-) 804 WP_067376605.1 DUF1338 domain-containing protein -
  A8C75_RS00565 (A8C75_00565) glnK 125368..125706 (-) 339 WP_020679463.1 P-II family nitrogen regulator -
  A8C75_RS00570 (A8C75_00570) - 125977..127251 (-) 1275 WP_067376608.1 ammonium transporter -
  A8C75_RS00575 (A8C75_00575) glnK 127287..127625 (-) 339 WP_067288876.1 P-II family nitrogen regulator -
  A8C75_RS00580 (A8C75_00580) - 127955..128218 (+) 264 WP_067376611.1 accessory factor UbiK family protein -
  A8C75_RS00585 (A8C75_00585) comM 128351..129874 (+) 1524 WP_067376614.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  A8C75_RS00590 (A8C75_00590) - 129881..131560 (-) 1680 WP_227819796.1 EAL domain-containing protein -
  A8C75_RS00595 (A8C75_00595) rep 131915..133927 (+) 2013 WP_067376617.1 DNA helicase Rep -
  A8C75_RS00600 (A8C75_00600) - 133951..134511 (+) 561 WP_067376620.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 53356.58 Da        Isoelectric Point: 8.0109

>NTDB_id=182382 A8C75_RS00585 WP_067376614.1 128351..129874(+) (comM) [Marinobacterium aestuarii strain ST58-10]
MSLAVVHARAMLGIGAPAVTVEVHLSGGLPSLNIVGLPEAAVRESKDRVRSALINSGFDYPQRRITINLAPADLPKEGGR
YDLAIALGILAASKQLPPQSLVGWEVLGELTLAGEIRPVRGVLPAAMVCRDLSRALLVPRLNGAEAALVQGCDVRVADHL
LQVCSALRGDSTLESAVAVPPPAVTGLPDLIEVKGQYQARRALEVAAAGSHNLLFSGPPGSGKSMLAARLPGLLPVLGEQ
ERLEVAAVYSVAGCAIDTVGHGSRPFRNPHHTASAVALVGGGSQPRPGEISLAHQGVLFLDELPEFPRAVLDVLREPLET
GEILISRAASQMLFPARFQLLAAMNPCPCGYFGDPSGRCRCTPDQIQRYQGRISGPLLDRFDMQLNVKALDPAQLLDPAS
GRGEASGVVAQRVAAAMSLQQARQGRPNRDLGAAELDQVCGLAPPQRDLLVNAATKLGLSARACHRILRVARTLADLAAE
ERVGEAQLLEALSFRQGLLRQGGSGAR

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=182382 A8C75_RS00585 WP_067376614.1 128351..129874(+) (comM) [Marinobacterium aestuarii strain ST58-10]
ATGTCACTTGCAGTGGTTCATGCCCGCGCAATGCTGGGTATAGGCGCGCCGGCGGTTACGGTGGAAGTACACCTCTCCGG
GGGTCTGCCATCCCTGAATATCGTTGGCCTGCCCGAAGCTGCTGTACGTGAAAGCAAGGATCGGGTGCGCAGCGCCCTGA
TCAACTCGGGTTTTGATTATCCGCAGCGTCGCATCACCATCAACCTGGCACCGGCTGATCTGCCCAAGGAAGGCGGACGC
TATGATCTGGCGATTGCGCTGGGCATTCTGGCGGCCTCGAAACAACTGCCCCCGCAGTCCCTGGTCGGCTGGGAAGTGCT
GGGTGAGTTGACTCTGGCGGGGGAGATCAGGCCAGTGCGAGGTGTGCTGCCGGCGGCGATGGTCTGCCGTGACCTGTCCC
GCGCCCTGCTGGTGCCCCGCCTTAACGGTGCTGAAGCGGCCCTGGTGCAGGGCTGCGATGTGCGGGTTGCCGATCATCTG
TTGCAGGTCTGTTCAGCCCTGCGTGGCGACAGCACTCTGGAGTCTGCAGTAGCAGTGCCGCCGCCGGCCGTAACGGGCCT
GCCGGACCTGATCGAGGTCAAGGGACAGTATCAGGCGCGCCGGGCGCTCGAGGTCGCTGCCGCCGGCAGTCATAATTTAC
TTTTCAGCGGCCCGCCCGGCAGTGGCAAGAGCATGCTGGCGGCGCGCTTGCCGGGGCTGTTGCCAGTATTGGGGGAGCAG
GAACGGCTCGAAGTGGCGGCGGTGTATTCGGTGGCGGGCTGTGCCATTGATACAGTGGGTCACGGCAGCCGGCCCTTTCG
CAATCCGCACCATACGGCCTCCGCGGTGGCGCTGGTGGGCGGCGGCAGTCAGCCAAGGCCCGGTGAAATTTCCCTGGCGC
ACCAGGGCGTACTGTTTCTGGATGAGCTGCCGGAGTTTCCCCGCGCTGTGCTGGATGTACTGCGCGAGCCACTGGAAACC
GGTGAAATTCTGATCTCCCGCGCCGCCAGTCAGATGCTTTTCCCAGCTCGATTTCAATTGCTGGCCGCGATGAATCCCTG
CCCCTGTGGCTATTTCGGTGATCCGTCGGGCCGCTGTCGCTGTACGCCGGATCAGATTCAGCGCTATCAGGGGCGCATCT
CGGGCCCACTGCTGGATCGCTTCGATATGCAGCTGAATGTGAAGGCGCTGGACCCGGCCCAGCTGCTGGACCCGGCGAGC
GGGCGGGGTGAAGCCAGTGGCGTGGTGGCCCAGCGCGTGGCCGCTGCCATGAGCCTGCAGCAGGCGCGCCAGGGACGGCC
CAATCGGGATCTGGGTGCGGCTGAACTGGATCAGGTTTGTGGCCTGGCACCGCCGCAGCGGGACTTGCTGGTGAATGCCG
CAACCAAGCTGGGGCTTTCGGCTCGTGCCTGTCACCGCATTTTGCGGGTGGCGCGCACCCTGGCGGATCTGGCTGCAGAG
GAACGGGTCGGTGAAGCACAGTTGCTGGAAGCGCTGAGCTTTCGCCAGGGATTGCTGCGCCAGGGCGGTTCAGGGGCGCG
TTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-495)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-393)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1A9ETA7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

53.226

97.83

0.521
  comM Vibrio campbellii strain DS40M4

52.505

98.422

0.517
  comM Glaesserella parasuis strain SC1401

51.703

98.422

0.509
  comM Haemophilus influenzae Rd KW20

50.2

98.619

0.495
  comM Legionella pneumophila str. Paris

49.299

98.422

0.485
  comM Legionella pneumophila strain ERS1305867

49.299

98.422

0.485
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.643

99.408

0.444

Multiple sequence alignment