Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | PS273GM_RS11245 | Genome accession | NZ_CP015641 |
| Coordinates | 2452555..2453061 (+) | Length | 168 a.a. |
| NCBI ID | WP_046164405.1 | Uniprot ID | A0A2N1CWM8 |
| Organism | Stutzerimonas stutzeri strain 273 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 2447555..2458061
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PS273GM_RS11235 (PS273GM_11235) | uvrA | 2448052..2450889 (-) | 2838 | WP_064481385.1 | excinuclease ABC subunit UvrA | - |
| PS273GM_RS11240 (PS273GM_11240) | - | 2451021..2452388 (+) | 1368 | WP_046164404.1 | MFS transporter | - |
| PS273GM_RS11245 (PS273GM_11245) | ssb | 2452555..2453061 (+) | 507 | WP_046164405.1 | single-stranded DNA-binding protein | Machinery gene |
| PS273GM_RS11250 (PS273GM_11250) | - | 2453072..2453956 (+) | 885 | WP_064481386.1 | sugar nucleotide-binding protein | - |
| PS273GM_RS11255 (PS273GM_11255) | - | 2453949..2454878 (+) | 930 | WP_064481387.1 | NAD-dependent epimerase/dehydratase family protein | - |
| PS273GM_RS11260 (PS273GM_11260) | - | 2454952..2455638 (-) | 687 | WP_046163951.1 | OmpW/AlkL family protein | - |
| PS273GM_RS11265 (PS273GM_11265) | - | 2455837..2456607 (+) | 771 | WP_064481388.1 | DUF3450 domain-containing protein | - |
| PS273GM_RS11270 (PS273GM_11270) | - | 2456604..2457950 (+) | 1347 | WP_046163949.1 | MotA/TolQ/ExbB proton channel family protein | - |
Sequence
Protein
Download Length: 168 a.a. Molecular weight: 18863.79 Da Isoelectric Point: 5.2939
>NTDB_id=181653 PS273GM_RS11245 WP_046164405.1 2452555..2453061(+) (ssb) [Stutzerimonas stutzeri strain 273]
MARGVNKVILIGNVGGDPETRYMPNGNAVTNITLATTDSWKDKQTGQQQERTEWHRVVLFGKVAEIAGEYLRKGSQCYIE
GRLQTREWEKDGVKRYTTEVVVDMGGTMQLLGGRGGSSDDAPRQSQPRPQRDSQPQQQQQQQSRPQSQPQPAQQPAPDYD
SFDDDIPF
MARGVNKVILIGNVGGDPETRYMPNGNAVTNITLATTDSWKDKQTGQQQERTEWHRVVLFGKVAEIAGEYLRKGSQCYIE
GRLQTREWEKDGVKRYTTEVVVDMGGTMQLLGGRGGSSDDAPRQSQPRPQRDSQPQQQQQQQSRPQSQPQPAQQPAPDYD
SFDDDIPF
Nucleotide
Download Length: 507 bp
>NTDB_id=181653 PS273GM_RS11245 WP_046164405.1 2452555..2453061(+) (ssb) [Stutzerimonas stutzeri strain 273]
ATGGCCAGAGGGGTGAATAAAGTCATCTTGATCGGCAATGTCGGCGGCGACCCGGAAACCCGCTACATGCCCAATGGCAA
TGCGGTGACCAATATCACGCTGGCCACCACCGACAGCTGGAAAGACAAGCAGACTGGCCAGCAGCAGGAGCGCACCGAGT
GGCATCGTGTCGTGCTGTTCGGCAAGGTTGCCGAGATTGCTGGCGAGTATCTGCGCAAGGGCTCGCAGTGTTATATCGAG
GGTCGCCTGCAAACCCGAGAGTGGGAAAAGGATGGCGTCAAGCGCTACACCACGGAGGTGGTTGTGGACATGGGCGGCAC
CATGCAGCTACTCGGTGGCCGTGGTGGCAGTTCCGACGATGCGCCTCGTCAGTCTCAGCCACGCCCCCAGCGTGACTCCC
AGCCGCAACAGCAACAGCAACAACAATCGCGCCCGCAGTCTCAGCCGCAGCCTGCTCAGCAGCCGGCCCCGGACTACGAC
AGTTTCGACGACGATATTCCGTTCTAG
ATGGCCAGAGGGGTGAATAAAGTCATCTTGATCGGCAATGTCGGCGGCGACCCGGAAACCCGCTACATGCCCAATGGCAA
TGCGGTGACCAATATCACGCTGGCCACCACCGACAGCTGGAAAGACAAGCAGACTGGCCAGCAGCAGGAGCGCACCGAGT
GGCATCGTGTCGTGCTGTTCGGCAAGGTTGCCGAGATTGCTGGCGAGTATCTGCGCAAGGGCTCGCAGTGTTATATCGAG
GGTCGCCTGCAAACCCGAGAGTGGGAAAAGGATGGCGTCAAGCGCTACACCACGGAGGTGGTTGTGGACATGGGCGGCAC
CATGCAGCTACTCGGTGGCCGTGGTGGCAGTTCCGACGATGCGCCTCGTCAGTCTCAGCCACGCCCCCAGCGTGACTCCC
AGCCGCAACAGCAACAGCAACAACAATCGCGCCCGCAGTCTCAGCCGCAGCCTGCTCAGCAGCCGGCCCCGGACTACGAC
AGTTTCGACGACGATATTCCGTTCTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
58.427 |
100 |
0.619 |
| ssb | Glaesserella parasuis strain SC1401 |
46.409 |
100 |
0.5 |
| ssb | Neisseria meningitidis MC58 |
45.81 |
100 |
0.488 |
| ssb | Neisseria gonorrhoeae MS11 |
45.81 |
100 |
0.488 |