Detailed information
Bioinformatically predicted
Overview
| Name | comM | Type | Machinery gene |
| Locus tag | A7319_RS28240 | Genome accession | NZ_CP015638 |
| Coordinates | 6314425..6315942 (+) | Length | 505 a.a. |
| NCBI ID | WP_069077278.1 | Uniprot ID | A0AB36Y1I9 |
| Organism | Pseudomonas fluorescens strain L111 | ||
| Function | DNA uptake (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 6298004..6342997 | 6314425..6315942 | within | 0 |
Gene organization within MGE regions
Location: 6298004..6342997
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A7319_RS28150 (A7319_28120) | argH | 6298841..6300235 (+) | 1395 | WP_024078056.1 | argininosuccinate lyase | - |
| A7319_RS28155 (A7319_28125) | - | 6300276..6300935 (-) | 660 | WP_024078057.1 | glutathione S-transferase family protein | - |
| A7319_RS28160 (A7319_28130) | - | 6301061..6301345 (+) | 285 | WP_024078058.1 | hypothetical protein | - |
| A7319_RS28165 (A7319_28135) | - | 6301498..6301752 (+) | 255 | WP_024078059.1 | TIGR02647 family protein | - |
| A7319_RS28170 (A7319_28140) | - | 6301921..6304761 (+) | 2841 | WP_069077280.1 | class I adenylate cyclase | - |
| A7319_RS28175 (A7319_28145) | rnk | 6304758..6305168 (-) | 411 | WP_024078061.1 | nucleoside diphosphate kinase regulator | - |
| A7319_RS28180 (A7319_28150) | - | 6305300..6305518 (-) | 219 | WP_024078062.1 | DUF1289 domain-containing protein | - |
| A7319_RS28185 (A7319_28155) | cyaY | 6305521..6305868 (-) | 348 | WP_024078063.1 | iron donor protein CyaY | - |
| A7319_RS30200 | lptM | 6306107..6306265 (+) | 159 | WP_024078064.1 | LPS translocon maturation chaperone LptM | - |
| A7319_RS28190 (A7319_28160) | lysA | 6306275..6307522 (+) | 1248 | WP_024078065.1 | diaminopimelate decarboxylase | - |
| A7319_RS28195 (A7319_28165) | dapF | 6307526..6308356 (+) | 831 | WP_024078066.1 | diaminopimelate epimerase | - |
| A7319_RS28200 (A7319_28170) | - | 6308370..6309086 (+) | 717 | WP_024078067.1 | DUF484 family protein | - |
| A7319_RS28205 (A7319_28175) | xerC | 6309089..6309988 (+) | 900 | WP_024078068.1 | tyrosine recombinase XerC | - |
| A7319_RS28210 (A7319_28180) | - | 6309985..6310680 (+) | 696 | WP_069077279.1 | HAD family hydrolase | - |
| A7319_RS28215 (A7319_28185) | sutA | 6310812..6311138 (-) | 327 | WP_010567186.1 | transcriptional regulator SutA | - |
| A7319_RS28220 (A7319_28190) | - | 6311241..6311666 (-) | 426 | WP_017845176.1 | secondary thiamine-phosphate synthase enzyme YjbQ | - |
| A7319_RS28225 (A7319_28195) | - | 6311878..6313215 (-) | 1338 | WP_024078070.1 | ammonium transporter | - |
| A7319_RS28230 (A7319_28200) | glnK | 6313250..6313588 (-) | 339 | WP_002555808.1 | P-II family nitrogen regulator | - |
| A7319_RS28235 (A7319_28205) | - | 6314011..6314271 (+) | 261 | WP_010567183.1 | accessory factor UbiK family protein | - |
| A7319_RS28240 (A7319_28210) | comM | 6314425..6315942 (+) | 1518 | WP_069077278.1 | YifB family Mg chelatase-like AAA ATPase | Machinery gene |
| A7319_RS28245 (A7319_28215) | - | 6316034..6317284 (-) | 1251 | WP_069077277.1 | benzoate/H(+) symporter BenE family transporter | - |
| A7319_RS28250 (A7319_28220) | - | 6317427..6318926 (+) | 1500 | WP_069077276.1 | PLP-dependent aminotransferase family protein | - |
| A7319_RS28255 (A7319_28225) | - | 6318947..6320923 (-) | 1977 | WP_069077275.1 | methyl-accepting chemotaxis protein | - |
| A7319_RS28260 (A7319_28230) | - | 6321101..6322021 (-) | 921 | WP_024078075.1 | LysR substrate-binding domain-containing protein | - |
| A7319_RS28265 (A7319_28235) | - | 6322174..6323577 (+) | 1404 | WP_069077274.1 | NorM family multidrug efflux MATE transporter | - |
| A7319_RS28270 (A7319_28240) | - | 6323587..6325251 (-) | 1665 | WP_024078077.1 | putative bifunctional diguanylate cyclase/phosphodiesterase | - |
| A7319_RS28275 (A7319_28245) | rep | 6325506..6327515 (+) | 2010 | WP_024078078.1 | DNA helicase Rep | - |
| A7319_RS28280 (A7319_28250) | - | 6327574..6328146 (+) | 573 | WP_024078079.1 | xanthine phosphoribosyltransferase | - |
| A7319_RS28285 (A7319_28255) | - | 6328359..6330281 (-) | 1923 | WP_069077273.1 | acetyl-CoA hydrolase/transferase C-terminal domain-containing protein | - |
| A7319_RS28290 (A7319_28260) | - | 6330419..6330883 (-) | 465 | WP_172831364.1 | c-type cytochrome | - |
| A7319_RS28295 (A7319_28265) | - | 6331054..6331602 (-) | 549 | WP_003176893.1 | cupin domain-containing protein | - |
| A7319_RS28300 (A7319_28270) | alr | 6331719..6332792 (-) | 1074 | WP_024078082.1 | alanine racemase | - |
| A7319_RS28305 (A7319_28275) | - | 6332873..6333226 (-) | 354 | WP_024078083.1 | RidA family protein | - |
| A7319_RS28310 (A7319_28280) | dadA | 6333198..6334499 (-) | 1302 | WP_024078084.1 | D-amino acid dehydrogenase | - |
| A7319_RS28315 (A7319_28285) | - | 6334655..6335143 (+) | 489 | WP_003176896.1 | Lrp/AsnC ligand binding domain-containing protein | - |
| A7319_RS28320 (A7319_28290) | - | 6335204..6335557 (-) | 354 | WP_017135860.1 | YkgJ family cysteine cluster protein | - |
| A7319_RS28325 (A7319_28295) | - | 6335673..6336965 (+) | 1293 | WP_069077272.1 | NAD(P)/FAD-dependent oxidoreductase | - |
| A7319_RS28330 (A7319_28300) | - | 6336966..6337190 (-) | 225 | WP_024078086.1 | DUF1127 domain-containing protein | - |
| A7319_RS28335 (A7319_28305) | - | 6337356..6338780 (+) | 1425 | WP_069077271.1 | PLP-dependent aminotransferase family protein | - |
| A7319_RS28340 (A7319_28310) | - | 6338843..6340411 (+) | 1569 | WP_069077270.1 | phospholipase D family protein | - |
| A7319_RS28345 (A7319_28315) | - | 6340474..6341616 (-) | 1143 | WP_069077269.1 | MFS transporter | - |
Sequence
Protein
Download Length: 505 a.a. Molecular weight: 53913.06 Da Isoelectric Point: 8.3578
>NTDB_id=181606 A7319_RS28240 WP_069077278.1 6314425..6315942(+) (comM) [Pseudomonas fluorescens strain L111]
MSLAIVHSRAQVGVEAPAVTVEVHMANGLPSLTLVGLPETAVKESKDRVRSAILNSALQYPSRRITLNLAPADLPKDGGR
FDLAIALGILAASVQVPALMLDDVECLGELALSGEVRAVKGVLPAALAARKAGRTVIVPRANAEEACLASGLKVIAVDHL
LQVVAHLNGHAPIEPYKSDGLLYSNKPYPDLSEVQGQLSAKRALLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLSE
QEALEVAAIQSVVSLAPLSHWPHRPFRQPHHSASGPALVGGGSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPLES
GHIVISRARDRVRFPARFQLVAAMNPCPCGYMGAPCNRCRCTPEQIQRYRNKLSGPLLDRIDLHLTVAREITALNPTPQP
GGDTSTASALVAQAREHQQRRQGCANAFLDLSGLRQHCALSKPDEAWLESACERLTLSLRAAHRLLKVARTLADLERADT
IGRNHIAEALQYRPSASSQVDGANG
MSLAIVHSRAQVGVEAPAVTVEVHMANGLPSLTLVGLPETAVKESKDRVRSAILNSALQYPSRRITLNLAPADLPKDGGR
FDLAIALGILAASVQVPALMLDDVECLGELALSGEVRAVKGVLPAALAARKAGRTVIVPRANAEEACLASGLKVIAVDHL
LQVVAHLNGHAPIEPYKSDGLLYSNKPYPDLSEVQGQLSAKRALLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLSE
QEALEVAAIQSVVSLAPLSHWPHRPFRQPHHSASGPALVGGGSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPLES
GHIVISRARDRVRFPARFQLVAAMNPCPCGYMGAPCNRCRCTPEQIQRYRNKLSGPLLDRIDLHLTVAREITALNPTPQP
GGDTSTASALVAQAREHQQRRQGCANAFLDLSGLRQHCALSKPDEAWLESACERLTLSLRAAHRLLKVARTLADLERADT
IGRNHIAEALQYRPSASSQVDGANG
Nucleotide
Download Length: 1518 bp
>NTDB_id=181606 A7319_RS28240 WP_069077278.1 6314425..6315942(+) (comM) [Pseudomonas fluorescens strain L111]
ATGTCCCTCGCCATCGTCCACAGCCGCGCCCAGGTCGGCGTCGAAGCCCCTGCCGTCACCGTCGAAGTGCATATGGCCAA
CGGGTTGCCGTCGCTCACCCTGGTGGGGCTGCCAGAAACCGCGGTCAAGGAAAGCAAGGACCGCGTACGCAGTGCCATCC
TCAACTCAGCGCTGCAATATCCTTCCCGCCGTATCACCCTCAACCTCGCGCCCGCCGACCTGCCCAAGGACGGTGGGCGC
TTTGATCTGGCGATCGCCCTGGGGATCCTGGCGGCGAGTGTGCAGGTGCCGGCGTTGATGCTGGATGACGTGGAGTGCCT
GGGGGAGTTGGCGTTGTCCGGCGAGGTGCGGGCGGTAAAAGGCGTATTGCCCGCCGCATTGGCGGCGCGCAAGGCCGGGC
GCACCGTGATAGTGCCGCGGGCGAATGCCGAGGAAGCGTGCCTGGCATCCGGGCTGAAGGTCATTGCCGTGGATCACCTG
CTGCAGGTGGTGGCACACCTGAATGGGCATGCACCGATTGAGCCCTACAAGTCTGACGGGCTGCTGTATTCGAACAAACC
CTACCCGGACCTGAGTGAAGTTCAGGGCCAGCTGTCAGCCAAGCGCGCACTGCTGATTGCAGCAGCGGGCGCACATAACC
TGCTGTTCAGCGGGCCACCAGGTACCGGCAAGACCTTGCTCGCCAGCCGCCTGCCCGGGTTGCTGCCGCCATTGAGTGAA
CAGGAAGCACTGGAAGTGGCGGCGATTCAATCCGTGGTCAGCCTGGCACCGCTGAGCCATTGGCCCCACCGGCCGTTTCG
CCAGCCACACCATTCAGCCTCCGGTCCGGCACTGGTGGGCGGCGGATCGAAACCGCAGCCGGGGGAAATCACCCTGGCCC
ATCATGGAGTGCTGTTCCTGGATGAACTCCCGGAGTTTGATCGCAAGGTGCTGGAGGTCTTGCGCGAGCCACTGGAGTCG
GGGCACATCGTGATTTCCCGCGCCCGTGACCGAGTGCGCTTCCCCGCGCGCTTCCAACTGGTGGCGGCGATGAACCCCTG
CCCCTGCGGTTATATGGGCGCGCCCTGCAACCGATGCCGTTGCACGCCCGAGCAAATCCAACGCTATCGCAACAAACTCT
CCGGGCCCTTGCTGGATCGGATCGACCTGCACTTGACGGTCGCCCGCGAAATCACCGCGCTGAACCCGACCCCACAGCCC
GGCGGCGACACATCCACCGCCTCCGCGCTGGTCGCCCAGGCTCGAGAGCATCAACAGCGGCGCCAGGGTTGCGCCAATGC
GTTCCTGGATCTCTCTGGGTTGCGCCAGCATTGCGCGCTGTCCAAGCCGGATGAAGCCTGGCTGGAAAGCGCCTGCGAGC
GCTTGACCCTGTCCCTTCGAGCCGCCCACCGCCTGCTCAAGGTCGCCCGCACTCTGGCGGACCTGGAGCGCGCAGACACT
ATCGGCCGCAACCACATTGCCGAAGCACTGCAATACCGGCCCTCGGCCTCCAGCCAAGTCGACGGCGCAAACGGCTAG
ATGTCCCTCGCCATCGTCCACAGCCGCGCCCAGGTCGGCGTCGAAGCCCCTGCCGTCACCGTCGAAGTGCATATGGCCAA
CGGGTTGCCGTCGCTCACCCTGGTGGGGCTGCCAGAAACCGCGGTCAAGGAAAGCAAGGACCGCGTACGCAGTGCCATCC
TCAACTCAGCGCTGCAATATCCTTCCCGCCGTATCACCCTCAACCTCGCGCCCGCCGACCTGCCCAAGGACGGTGGGCGC
TTTGATCTGGCGATCGCCCTGGGGATCCTGGCGGCGAGTGTGCAGGTGCCGGCGTTGATGCTGGATGACGTGGAGTGCCT
GGGGGAGTTGGCGTTGTCCGGCGAGGTGCGGGCGGTAAAAGGCGTATTGCCCGCCGCATTGGCGGCGCGCAAGGCCGGGC
GCACCGTGATAGTGCCGCGGGCGAATGCCGAGGAAGCGTGCCTGGCATCCGGGCTGAAGGTCATTGCCGTGGATCACCTG
CTGCAGGTGGTGGCACACCTGAATGGGCATGCACCGATTGAGCCCTACAAGTCTGACGGGCTGCTGTATTCGAACAAACC
CTACCCGGACCTGAGTGAAGTTCAGGGCCAGCTGTCAGCCAAGCGCGCACTGCTGATTGCAGCAGCGGGCGCACATAACC
TGCTGTTCAGCGGGCCACCAGGTACCGGCAAGACCTTGCTCGCCAGCCGCCTGCCCGGGTTGCTGCCGCCATTGAGTGAA
CAGGAAGCACTGGAAGTGGCGGCGATTCAATCCGTGGTCAGCCTGGCACCGCTGAGCCATTGGCCCCACCGGCCGTTTCG
CCAGCCACACCATTCAGCCTCCGGTCCGGCACTGGTGGGCGGCGGATCGAAACCGCAGCCGGGGGAAATCACCCTGGCCC
ATCATGGAGTGCTGTTCCTGGATGAACTCCCGGAGTTTGATCGCAAGGTGCTGGAGGTCTTGCGCGAGCCACTGGAGTCG
GGGCACATCGTGATTTCCCGCGCCCGTGACCGAGTGCGCTTCCCCGCGCGCTTCCAACTGGTGGCGGCGATGAACCCCTG
CCCCTGCGGTTATATGGGCGCGCCCTGCAACCGATGCCGTTGCACGCCCGAGCAAATCCAACGCTATCGCAACAAACTCT
CCGGGCCCTTGCTGGATCGGATCGACCTGCACTTGACGGTCGCCCGCGAAATCACCGCGCTGAACCCGACCCCACAGCCC
GGCGGCGACACATCCACCGCCTCCGCGCTGGTCGCCCAGGCTCGAGAGCATCAACAGCGGCGCCAGGGTTGCGCCAATGC
GTTCCTGGATCTCTCTGGGTTGCGCCAGCATTGCGCGCTGTCCAAGCCGGATGAAGCCTGGCTGGAAAGCGCCTGCGAGC
GCTTGACCCTGTCCCTTCGAGCCGCCCACCGCCTGCTCAAGGTCGCCCGCACTCTGGCGGACCTGGAGCGCGCAGACACT
ATCGGCCGCAACCACATTGCCGAAGCACTGCAATACCGGCCCTCGGCCTCCAGCCAAGTCGACGGCGCAAACGGCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comM | Vibrio campbellii strain DS40M4 |
56.713 |
98.812 |
0.56 |
| comM | Vibrio cholerae strain A1552 |
56.313 |
98.812 |
0.556 |
| comM | Glaesserella parasuis strain SC1401 |
55.2 |
99.01 |
0.547 |
| comM | Haemophilus influenzae Rd KW20 |
54.509 |
98.812 |
0.539 |
| comM | Legionella pneumophila str. Paris |
51.004 |
98.614 |
0.503 |
| comM | Legionella pneumophila strain ERS1305867 |
51.004 |
98.614 |
0.503 |
| RA0C_RS07335 | Riemerella anatipestifer ATCC 11845 = DSM 15868 |
47.024 |
99.802 |
0.469 |