Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AsACE_RS13520 Genome accession   NZ_CP015615
Coordinates   2789512..2790999 (+) Length   495 a.a.
NCBI ID   WP_076754590.1    Uniprot ID   -
Organism   Acinetobacter schindleri strain ACE     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 2784512..2795999
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AsACE_RS13495 (AsACE_CH02687) ribD 2785439..2786527 (-) 1089 WP_076754588.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  AsACE_RS13500 (AsACE_CH02688) nrdR 2786530..2786997 (-) 468 WP_004787309.1 transcriptional regulator NrdR -
  AsACE_RS13505 (AsACE_CH02689) - 2787137..2788546 (-) 1410 WP_004810169.1 ammonium transporter -
  AsACE_RS13510 (AsACE_CH02690) glnK 2788606..2788944 (-) 339 WP_004281042.1 P-II family nitrogen regulator -
  AsACE_RS13515 (AsACE_CH02691) - 2789221..2789448 (+) 228 WP_004810171.1 accessory factor UbiK family protein -
  AsACE_RS13520 (AsACE_CH02692) comM 2789512..2790999 (+) 1488 WP_076754590.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AsACE_RS13525 (AsACE_CH02693) - 2791058..2791792 (-) 735 WP_004810177.1 TorF family putative porin -
  AsACE_RS16600 - 2792399..2792572 (-) 174 WP_228145423.1 hypothetical protein -
  AsACE_RS13535 - 2792556..2792930 (-) 375 WP_076754592.1 TorF family putative porin -
  AsACE_RS13540 (AsACE_CH02695) - 2793438..2794763 (+) 1326 WP_004810184.1 OprD family outer membrane porin -
  AsACE_RS13545 (AsACE_CH02696) ppa 2794863..2795399 (-) 537 WP_004281037.1 inorganic diphosphatase -
  AsACE_RS13550 (AsACE_CH02697) - 2795520..2795918 (-) 399 WP_004810187.1 MAPEG family protein -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 54531.64 Da        Isoelectric Point: 7.5578

>NTDB_id=181544 AsACE_RS13520 WP_076754590.1 2789512..2790999(+) (comM) [Acinetobacter schindleri strain ACE]
MSFAKIHTRGLLGLHAPLIEVEVHVSQGMPSLTIVGLPEAAVRESKDRVRSAILNSGYQFPTKRLTINLAPADLPKDGSR
LDLPIALGILMASGQLPENCTDGMEFIGELALDGQLRPITGTLSIAIACQQSQHELILPKENAQEACQLPDFRVFAAAHL
KEVCDHLNRLAPLVQMQARPQVNHSDSRFDLADVKGQLRPRRALEIAAAGGHSLLFRGPPGTGKTLLASRLASILPPLNT
EENLEVASIYSIANNSHTFGQRPFRAPHHTASAVALVGGGSHPKPGEITLAHLGVLFLDELPEFDRKVLEVLRQPLESKE
IVISRASRQITFPANFQLVAAMNPCPCGYAFNQDIRCQCSPEMIKRYQNRISGPLLDRIDLHIDVPPLQAHELQSTQPVE
DSATVRERVITAYELQIQRQKKLNMALNPKELEQFAPLNAQTSKMFELAQQKLNLSARAYHRVLRVARSIADLAENSEIQ
PQHLSEALSYRGQQS

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=181544 AsACE_RS13520 WP_076754590.1 2789512..2790999(+) (comM) [Acinetobacter schindleri strain ACE]
ATGTCTTTTGCTAAAATCCATACTCGGGGATTGCTGGGACTGCATGCCCCTTTAATAGAAGTTGAAGTTCATGTCAGTCA
GGGCATGCCCTCCTTAACTATTGTTGGACTGCCCGAAGCGGCGGTTCGGGAAAGTAAGGATCGGGTTCGTTCTGCTATTT
TGAATAGTGGCTACCAGTTCCCGACCAAACGCTTAACTATTAACCTGGCTCCTGCTGACCTGCCCAAAGACGGTTCACGT
TTAGATCTGCCAATTGCTTTAGGGATTCTGATGGCATCGGGGCAATTACCTGAAAACTGTACTGATGGAATGGAATTCAT
CGGTGAACTTGCTTTAGATGGTCAACTCCGTCCCATCACTGGTACGCTTAGTATTGCGATTGCCTGTCAACAATCGCAGC
ATGAACTGATTCTACCTAAAGAAAATGCTCAGGAAGCCTGTCAGTTACCTGATTTCCGGGTATTTGCCGCTGCTCATCTA
AAAGAAGTTTGTGATCATTTAAATAGACTCGCACCTTTAGTCCAGATGCAGGCCCGACCACAGGTGAATCACTCAGATTC
TCGCTTTGATTTAGCCGATGTCAAAGGCCAGCTGCGCCCAAGACGGGCTTTGGAAATTGCTGCTGCAGGTGGACATTCTT
TATTATTTAGAGGACCTCCTGGAACCGGTAAAACTTTACTGGCTTCTCGGCTAGCCAGTATCTTGCCGCCTCTCAATACT
GAAGAAAATCTTGAAGTCGCCAGTATTTATTCTATTGCCAATAATAGTCATACTTTTGGACAACGTCCTTTCCGCGCGCC
ACATCATACCGCGTCTGCAGTTGCCCTGGTCGGTGGAGGATCACATCCTAAACCAGGTGAAATTACGCTGGCACATTTAG
GAGTGTTATTTCTCGACGAACTGCCGGAATTTGACAGGAAAGTTCTTGAAGTACTACGTCAACCTTTGGAATCTAAGGAA
ATTGTAATTTCGCGTGCCTCTCGACAAATTACTTTCCCAGCCAACTTTCAGCTGGTTGCAGCGATGAATCCCTGCCCTTG
TGGTTATGCTTTCAATCAGGATATTCGCTGCCAGTGTTCTCCAGAAATGATCAAGCGTTATCAGAACCGGATTTCTGGGC
CATTACTGGATCGGATTGACCTGCATATCGATGTACCACCTCTGCAAGCTCATGAATTACAATCTACACAACCGGTAGAA
GATTCTGCAACCGTTAGGGAGCGTGTGATAACTGCCTACGAACTGCAAATACAAAGACAGAAAAAGCTGAATATGGCATT
AAACCCAAAAGAATTAGAGCAATTTGCGCCACTAAATGCTCAGACCAGTAAAATGTTTGAACTTGCCCAACAAAAGTTAA
ATTTATCTGCCCGTGCTTATCATCGAGTATTACGAGTAGCACGAAGCATAGCTGATTTAGCTGAGAATTCAGAAATTCAG
CCTCAGCATTTATCGGAAGCTTTATCTTATCGAGGTCAGCAAAGCTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

52.705

100

0.531
  comM Vibrio cholerae strain A1552

51.919

100

0.519
  comM Glaesserella parasuis strain SC1401

51.2

100

0.517
  comM Vibrio campbellii strain DS40M4

50.909

100

0.509
  comM Legionella pneumophila str. Paris

49.194

100

0.493
  comM Legionella pneumophila strain ERS1305867

49.194

100

0.493
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.012

100

0.477

Multiple sequence alignment