Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   Q5A_RS24290 Genome accession   NZ_CP015613
Coordinates   5281263..5282786 (+) Length   507 a.a.
NCBI ID   WP_065506783.1    Uniprot ID   A0AA93BV49
Organism   Serratia inhibens PRI-2C     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 5276263..5287786
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q5A_RS24270 (Q5A_024675) ilvE 5276463..5277389 (-) 927 WP_065506779.1 branched-chain-amino-acid transaminase -
  Q5A_RS24275 (Q5A_024680) ilvM 5277412..5277669 (-) 258 WP_065506780.1 acetolactate synthase 2 small subunit -
  Q5A_RS24280 (Q5A_024685) ilvG 5277666..5279312 (-) 1647 WP_065506781.1 acetolactate synthase 2 catalytic subunit -
  Q5A_RS25990 ilvL 5279455..5279553 (-) 99 WP_013814970.1 ilv operon leader peptide -
  Q5A_RS24285 (Q5A_024690) - 5279687..5280919 (-) 1233 WP_065506782.1 MFS transporter -
  Q5A_RS24290 (Q5A_024695) comM 5281263..5282786 (+) 1524 WP_065506783.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  Q5A_RS24295 (Q5A_024700) - 5282814..5283152 (-) 339 WP_065506784.1 DUF413 domain-containing protein -
  Q5A_RS24300 (Q5A_024705) hdfR 5283272..5284099 (+) 828 WP_065506785.1 HTH-type transcriptional regulator HdfR -
  Q5A_RS24305 (Q5A_024710) yjfF 5284104..5285096 (-) 993 WP_065506786.1 galactofuranose ABC transporter, permease protein YjfF -
  Q5A_RS24310 (Q5A_024715) ytfT 5285093..5286094 (-) 1002 WP_065506787.1 galactofuranose ABC transporter, ATP-binding protein YtfT -
  Q5A_RS24315 (Q5A_024720) ytfR 5286112..5287626 (-) 1515 WP_065506788.1 galactofuranose ABC transporter, ATP-binding protein YtfR -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54445.86 Da        Isoelectric Point: 8.0968

>NTDB_id=181495 Q5A_RS24290 WP_065506783.1 5281263..5282786(+) (comM) [Serratia inhibens PRI-2C]
MSLAVIYTRATMGVQAPSVTVEVHISNGLPGLTMVGLPETTVKEARDRVRSALINNGFTFPARRITVNLAPADLPKEGGR
YDLPIALAILAASEQLPADQLARYEFLGELALSGTLRGVSGAIPAALAAMDAGRQLILAAANGKEVGLIAQSETRVAEHL
LEVCAFLLGKGVLPAASAPAAAETRQDPADLQDILGQEQAKRALEIAAAGGHNLLLVGPPGTGKTMLASRLNGLLPPLTD
REALESVAVASLLHHPAETLPWRQRPFRAPHHSASMVALVGGGSLPRPGEISMAHNGVLFLDELPEFERRVLDALREPLE
SGEIVISRASAKVCFPARVQLIAAMNPSPTGHYQGMHNRASPQQVLRYLGRLSGPFLDRFDLSIEVPLLPPGVLSKKRAG
GESSIQVRERVLQARERQLCRAGKINALLSNPEVERDCTLSAADADFLETTLNKLGLSVRAWQRILKVARTLADLAGDRD
IDKRHLSEALGYRCMDRLLLQLHRSLE

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=181495 Q5A_RS24290 WP_065506783.1 5281263..5282786(+) (comM) [Serratia inhibens PRI-2C]
ATGTCACTGGCGGTTATCTATACCCGGGCAACGATGGGCGTTCAGGCCCCTTCGGTGACGGTAGAAGTGCATATCAGCAA
CGGGTTGCCCGGCCTGACCATGGTCGGTCTGCCGGAAACGACAGTGAAAGAAGCCCGCGATAGGGTACGCAGCGCGTTGA
TCAACAACGGTTTCACCTTTCCCGCCCGGCGCATCACCGTCAATTTGGCGCCGGCCGATCTTCCCAAAGAGGGCGGCCGT
TACGACCTGCCGATTGCCCTGGCGATCCTCGCCGCCTCCGAACAACTGCCGGCCGATCAGCTGGCGCGCTACGAGTTCCT
CGGGGAGCTGGCGCTCTCCGGCACTCTGCGAGGGGTAAGTGGCGCGATACCCGCCGCGCTGGCGGCTATGGATGCCGGAA
GGCAACTGATTCTCGCGGCGGCCAATGGTAAGGAAGTCGGCCTGATTGCACAGAGTGAAACCCGGGTGGCGGAACACCTG
CTGGAAGTGTGCGCCTTTCTGTTGGGCAAAGGTGTTTTACCGGCGGCCAGCGCCCCGGCCGCCGCCGAAACCCGGCAGGA
CCCTGCCGATCTGCAGGATATTCTGGGCCAGGAGCAGGCCAAGCGTGCGTTGGAGATCGCCGCCGCTGGGGGGCATAACC
TGCTGCTGGTCGGCCCGCCGGGTACCGGGAAAACCATGTTGGCCAGCCGTCTCAATGGCCTGCTGCCGCCGCTGACCGAC
CGGGAAGCCCTGGAAAGCGTGGCCGTAGCCAGCCTGCTGCATCACCCTGCTGAAACGCTGCCATGGCGCCAGCGGCCATT
TCGTGCACCGCATCACAGCGCCTCGATGGTCGCGCTGGTCGGTGGTGGCTCACTGCCGCGGCCGGGTGAAATCTCCATGG
CACACAACGGCGTACTGTTTCTGGACGAGTTGCCGGAATTCGAACGGCGCGTGCTGGATGCCTTGCGTGAACCGCTGGAG
TCTGGCGAGATCGTCATTTCACGCGCCAGCGCCAAGGTCTGCTTTCCGGCCAGGGTGCAGTTGATCGCAGCAATGAATCC
CAGCCCGACAGGACACTACCAGGGCATGCATAACCGTGCGTCGCCGCAGCAAGTCCTGCGCTATCTCGGGCGGCTTTCAG
GGCCGTTTCTCGATCGTTTCGATTTATCGATTGAGGTGCCGTTGCTGCCGCCAGGCGTTCTCAGTAAAAAGCGCGCCGGT
GGAGAAAGCAGCATTCAGGTACGGGAGCGGGTATTGCAGGCACGTGAGAGGCAGCTTTGTCGGGCAGGAAAAATCAACGC
CCTGTTGAGTAATCCCGAAGTCGAGCGAGATTGTACGCTTAGCGCAGCAGACGCCGATTTTCTTGAGACTACGTTAAACA
AGTTGGGATTATCGGTTCGCGCCTGGCAACGAATTTTAAAAGTGGCACGTACGCTGGCGGATTTGGCAGGGGATCGGGAT
ATTGATAAGCGCCACCTGAGCGAAGCGCTTGGCTACCGCTGTATGGACCGCTTGCTGTTGCAGTTGCACCGCAGCCTGGA
ATAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-389)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

66.206

99.803

0.661
  comM Glaesserella parasuis strain SC1401

65.286

100

0.653
  comM Vibrio cholerae strain A1552

63.745

99.014

0.631
  comM Vibrio campbellii strain DS40M4

63.546

99.014

0.629
  comM Legionella pneumophila str. Paris

50.605

97.83

0.495
  comM Legionella pneumophila strain ERS1305867

50.605

97.83

0.495
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.471

100

0.467

Multiple sequence alignment