Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   A7J50_RS28425 Genome accession   NZ_CP015600
Coordinates   6233994..6235490 (+) Length   498 a.a.
NCBI ID   WP_064454699.1    Uniprot ID   A0A172Z913
Organism   Pseudomonas antarctica strain PAMC 27494     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6228994..6240490
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A7J50_RS28395 (A7J50_5679) - 6229416..6230111 (+) 696 WP_064454696.1 HAD family hydrolase -
  A7J50_RS28400 (A7J50_5680) sutA 6230319..6230645 (-) 327 WP_064454697.1 transcriptional regulator SutA -
  A7J50_RS28405 (A7J50_5681) - 6230747..6231172 (-) 426 WP_017845176.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  A7J50_RS28410 (A7J50_5682) - 6231384..6232724 (-) 1341 WP_064454698.1 ammonium transporter -
  A7J50_RS28415 (A7J50_5683) glnK 6232760..6233098 (-) 339 WP_002555808.1 P-II family nitrogen regulator -
  A7J50_RS28420 (A7J50_5684) - 6233520..6233780 (+) 261 WP_025856328.1 accessory factor UbiK family protein -
  A7J50_RS28425 (A7J50_5685) comM 6233994..6235490 (+) 1497 WP_064454699.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  A7J50_RS28430 (A7J50_5686) - 6235487..6236071 (-) 585 WP_064454700.1 TetR/AcrR family transcriptional regulator -
  A7J50_RS28435 (A7J50_5687) - 6236184..6237098 (+) 915 WP_064454701.1 ABC transporter six-transmembrane domain-containing protein -
  A7J50_RS28440 (A7J50_5688) - 6237102..6239078 (-) 1977 WP_064454702.1 methyl-accepting chemotaxis protein -
  A7J50_RS28445 (A7J50_5689) - 6239256..6240176 (-) 921 WP_064454703.1 LysR substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 53569.80 Da        Isoelectric Point: 8.4256

>NTDB_id=181295 A7J50_RS28425 WP_064454699.1 6233994..6235490(+) (comM) [Pseudomonas antarctica strain PAMC 27494]
MSLAIVHSRAQIGVEAPAVSVEVHMANGLPSLTLVGLPETAVRESKDRVRSAILNSALQYPARRITLNLAPADLPKDGGR
FDLAIALGILAASMQVPALMLDDVECLGELALSGEVRAVKGVLPAALAARKAGRTVIVPRANAEEACLASGLKVIAVDHL
LQVVAHLNGHVPIEPYKSDGLLYLNKPYPDLSEVQGQLAAKRALLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLSE
QEALEVAAIQSVVSPAPLSHWPHRPFRQPHHSASGPALVGGGSKPQPGEITLAHHRVLFLDELPEFDRKVLEVLREPLES
GHIVISRARDRVSFPARFQLVAAMNPCPCGYLGDPSGRCRCTPEQIQRYRNKLSGPLLDRIDLHVTVARETTALNPTQQD
GDNTAKASAEVAEARERQQRRQGCANAFLDLPGLRKHCRLAKADESWLESACERLTLSLRAAHRLLKVARTLADLEQVEH
IARHHLAEALQYRPAAVG

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=181295 A7J50_RS28425 WP_064454699.1 6233994..6235490(+) (comM) [Pseudomonas antarctica strain PAMC 27494]
ATGTCCCTCGCCATCGTCCACAGCCGCGCCCAGATTGGCGTCGAAGCCCCTGCCGTCAGCGTTGAAGTGCATATGGCCAA
CGGCCTGCCCTCCCTGACGCTGGTAGGCCTGCCGGAAACTGCTGTCAGGGAAAGCAAGGACCGCGTGCGCAGCGCCATCC
TTAACTCAGCGCTGCAATACCCGGCCCGCCGCATCACCCTCAACCTCGCGCCTGCCGACCTGCCCAAGGACGGCGGGCGT
TTTGATTTGGCGATTGCCCTGGGGATTCTGGCGGCCAGCATGCAAGTGCCGGCGTTGATGCTGGACGACGTGGAGTGCCT
GGGTGAGTTGGCGCTGTCCGGTGAGGTGCGCGCGGTCAAAGGCGTGCTGCCCGCCGCGCTGGCGGCGCGCAAGGCCGGGC
GCACCGTGATAGTGCCTCGGGCCAATGCCGAGGAAGCGTGCCTGGCGTCGGGGTTGAAGGTGATTGCGGTAGACCACCTG
CTGCAGGTGGTGGCGCACCTGAACGGGCATGTGCCGATTGAGCCCTATAAGTCCGACGGGCTGCTGTACCTGAACAAACC
CTATCCGGACCTGAGCGAAGTGCAGGGGCAACTGGCAGCCAAGCGCGCTTTGCTGATCGCGGCGGCGGGCGCGCATAACC
TGCTGTTCAGCGGGCCACCCGGCACCGGCAAGACGTTGCTCGCCAGTCGGCTGCCTGGGCTGCTGCCGCCACTGAGTGAA
CAGGAAGCCCTGGAAGTCGCAGCAATTCAGTCAGTGGTCAGCCCGGCGCCGCTGAGCCATTGGCCGCACCGCCCGTTTCG
CCAGCCGCACCACTCCGCTTCCGGGCCGGCACTGGTCGGCGGGGGTTCAAAACCACAACCCGGGGAAATCACCCTCGCCC
ACCATCGTGTGCTGTTTCTGGATGAGTTGCCGGAGTTTGATCGCAAAGTGCTGGAGGTGCTGCGCGAGCCACTGGAGTCG
GGGCATATTGTGATTTCCCGCGCCCGTGACCGGGTGAGTTTCCCCGCGCGGTTTCAATTGGTGGCCGCCATGAACCCCTG
CCCTTGCGGCTATCTGGGCGACCCCAGCGGGCGTTGCCGCTGTACGCCGGAGCAGATCCAGCGCTATCGCAACAAACTCT
CCGGGCCATTGCTGGACCGCATCGACTTGCACGTAACCGTCGCCCGGGAAACGACCGCGCTGAACCCCACCCAACAGGAC
GGCGATAACACGGCGAAGGCGTCAGCAGAGGTTGCCGAGGCCCGCGAGCGCCAGCAACGACGTCAAGGCTGCGCCAATGC
TTTTCTGGACCTGCCAGGGTTACGCAAGCACTGTCGACTGGCGAAAGCCGATGAGAGCTGGCTGGAAAGCGCCTGCGAAC
GGCTGACATTGTCCCTGCGCGCAGCTCATCGGTTGCTTAAGGTGGCGCGGACCCTGGCCGACCTTGAACAGGTAGAGCAC
ATCGCCCGCCATCATTTGGCGGAGGCGCTGCAGTACCGCCCTGCGGCAGTTGGTTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A172Z913

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.96

99.398

0.556
  comM Glaesserella parasuis strain SC1401

55.289

100

0.556
  comM Vibrio campbellii strain DS40M4

55.758

99.398

0.554
  comM Haemophilus influenzae Rd KW20

54.4

100

0.546
  comM Legionella pneumophila str. Paris

50.806

99.598

0.506
  comM Legionella pneumophila strain ERS1305867

50.806

99.598

0.506
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.924

100

0.464

Multiple sequence alignment