Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   A3K93_RS11695 Genome accession   NZ_CP015594
Coordinates   2422206..2423699 (+) Length   497 a.a.
NCBI ID   WP_067731369.1    Uniprot ID   -
Organism   Acinetobacter sp. NCu2D-2     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 2417206..2428699
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A3K93_RS11670 (A3K93_11670) ribD 2418131..2419219 (-) 1089 WP_067731366.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  A3K93_RS11675 (A3K93_11675) nrdR 2419222..2419686 (-) 465 WP_067731367.1 transcriptional regulator NrdR -
  A3K93_RS11680 (A3K93_11680) - 2419825..2421237 (-) 1413 WP_067731368.1 ammonium transporter -
  A3K93_RS11685 (A3K93_11685) glnK 2421297..2421635 (-) 339 WP_005094485.1 P-II family nitrogen regulator -
  A3K93_RS11690 (A3K93_11690) - 2421913..2422140 (+) 228 WP_067731742.1 accessory factor UbiK family protein -
  A3K93_RS11695 (A3K93_11695) comM 2422206..2423699 (+) 1494 WP_067731369.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  A3K93_RS11700 (A3K93_11700) - 2423737..2424462 (-) 726 WP_067731370.1 TorF family putative porin -
  A3K93_RS11705 (A3K93_11705) - 2425217..2426515 (+) 1299 WP_067731371.1 OprD family outer membrane porin -
  A3K93_RS11710 (A3K93_11710) ppa 2426607..2427143 (-) 537 WP_067731372.1 inorganic diphosphatase -
  A3K93_RS11715 (A3K93_11715) - 2427266..2427664 (-) 399 WP_067731373.1 MAPEG family protein -
  A3K93_RS11720 (A3K93_11720) - 2427764..2428144 (+) 381 WP_067731374.1 hypothetical protein -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 54751.82 Da        Isoelectric Point: 7.2116

>NTDB_id=181264 A3K93_RS11695 WP_067731369.1 2422206..2423699(+) (comM) [Acinetobacter sp. NCu2D-2]
MSFAKIYTRGLLGLHAPLIEVEVHVSQGMPSLTIVGLAEAAVRESKDRVRSAILNSGFQFPTKRLTINLAPADLPKDGSR
LDLPIALGILIASGQLPEHCTDGLEFVGELALDGQLRPVTGVLSIAIACQQQQHTLILPSPNAEEACQLPDFKVYGANHL
KEVCDHLSDAARLTEFQTQQHTVQYAYKFDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLASILPPLNT
QENLEVASIYSIANAQHPFGQRPFRAPHHTASAIALVGGGSHPKPGEITLAHLGVLFLDELPEFDRKVLEVLRQPLESKE
IVISRASRQITFPANFQLIAAMNPCPCGYAFNHDVRCQCSPEQIKRYQNRISGPLLDRIDLHIDVPPLPAKELQSQQATE
NSETVRQRVIQAYERQMQRQNCLNMSLSPKQLEQYAELNTEAAKMIELAQQKLDLSARAYHRVLRVARTIADLAESEAIQ
SLHLSEALSYRSQIPQI

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=181264 A3K93_RS11695 WP_067731369.1 2422206..2423699(+) (comM) [Acinetobacter sp. NCu2D-2]
ATGTCTTTTGCAAAAATTTATACCCGAGGTCTACTCGGGTTGCATGCACCTCTCATTGAAGTTGAGGTACATGTCAGTCA
GGGAATGCCCTCTTTAACCATTGTTGGACTAGCAGAAGCCGCGGTACGAGAAAGTAAAGACCGTGTCCGTTCTGCCATTT
TAAATAGTGGTTTTCAATTTCCAACCAAACGCTTAACCATTAACTTAGCACCCGCTGATCTACCCAAAGATGGTTCAAGA
CTAGATTTACCGATTGCCCTTGGAATCTTAATCGCATCTGGGCAACTCCCTGAACATTGCACGGACGGATTAGAGTTTGT
AGGAGAGCTAGCCTTAGACGGTCAGCTTCGCCCTGTGACAGGTGTACTCAGTATTGCGATTGCCTGCCAACAACAGCAGC
ACACGTTAATATTACCTAGCCCAAATGCAGAAGAAGCCTGCCAACTTCCCGATTTTAAAGTTTATGGGGCTAATCATCTA
AAAGAAGTCTGCGATCACTTAAGCGATGCTGCTCGACTCACTGAATTTCAAACTCAGCAACACACGGTCCAATATGCCTA
TAAATTTGATTTAGCCGATGTTAAAGGACAATTACGTCCACGACGGGCATTAGAAATTGCTGCTGCCGGCGGACATTCAT
TACTGTTTAAAGGGCCTCCCGGGACAGGTAAAACATTATTGGCTTCTCGTTTAGCCAGTATTTTGCCGCCACTCAATACT
CAAGAAAATTTAGAGGTTGCGAGTATTTATTCCATTGCCAATGCTCAACATCCTTTTGGACAAAGACCTTTTCGAGCACC
ACATCACACTGCATCTGCGATCGCACTTGTCGGTGGTGGTTCTCATCCAAAACCAGGTGAAATCACTTTGGCACATCTGG
GCGTTTTATTTTTAGATGAACTCCCTGAATTTGATCGTAAAGTATTAGAAGTTTTAAGACAACCTTTAGAATCTAAAGAA
ATTGTGATTTCCCGAGCATCACGTCAAATCACTTTCCCTGCAAATTTTCAATTAATTGCAGCAATGAATCCCTGCCCTTG
TGGATATGCCTTTAACCATGATGTTCGTTGCCAATGTTCGCCAGAACAAATCAAGCGTTATCAAAACCGAATTTCAGGAC
CTTTATTAGATCGAATAGATTTGCATATTGATGTACCCCCTTTGCCAGCAAAAGAATTACAAAGCCAGCAAGCCACTGAA
AACTCAGAAACCGTACGTCAACGTGTGATACAGGCTTATGAACGGCAAATGCAGCGGCAAAATTGCTTAAACATGAGTTT
AAGCCCGAAACAGCTTGAGCAGTATGCTGAACTTAATACCGAGGCTGCCAAAATGATTGAATTAGCTCAGCAGAAACTTG
ATTTATCTGCCCGTGCCTATCATCGGGTACTTCGTGTCGCGAGAACCATTGCCGATTTAGCAGAAAGTGAGGCCATTCAG
AGTCTTCATTTATCTGAAGCATTGTCTTATCGAAGCCAAATTCCACAGATATAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Subunit ChlI of Mg-chelatase (ChlI)

(21-141)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

52.183

100

0.529
  comM Glaesserella parasuis strain SC1401

51.098

100

0.515
  comM Vibrio cholerae strain A1552

51.411

99.799

0.513
  comM Vibrio campbellii strain DS40M4

50.806

99.799

0.507
  comM Legionella pneumophila str. Paris

49.9

100

0.501
  comM Legionella pneumophila strain ERS1305867

49.9

100

0.501
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.316

100

0.479

Multiple sequence alignment