Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   A7K98_RS19890 Genome accession   NZ_CP015579
Coordinates   4200552..4202072 (+) Length   506 a.a.
NCBI ID   WP_087490099.1    Uniprot ID   A0A1Y0LP47
Organism   Tatumella citrea strain DSM 13699     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4195552..4207072
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A7K98_RS19875 (A7K98_19690) ilvE 4197127..4198056 (-) 930 WP_087490096.1 branched-chain-amino-acid transaminase -
  A7K98_RS19880 (A7K98_19695) ilvM 4198069..4198332 (-) 264 WP_087490097.1 acetolactate synthase 2 small subunit -
  A7K98_RS19885 (A7K98_19700) ilvG 4198329..4199975 (-) 1647 WP_087490098.1 acetolactate synthase 2 catalytic subunit -
  A7K98_RS21445 ilvL 4200126..4200224 (-) 99 WP_157666024.1 ilv operon leader peptide -
  A7K98_RS19890 (A7K98_19705) comM 4200552..4202072 (+) 1521 WP_087490099.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  A7K98_RS19895 (A7K98_19710) - 4202146..4202484 (-) 339 WP_087490100.1 DUF413 domain-containing protein -
  A7K98_RS19900 (A7K98_19715) hdfR 4202606..4203430 (+) 825 WP_087490101.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55144.75 Da        Isoelectric Point: 9.2138

>NTDB_id=181147 A7K98_RS19890 WP_087490099.1 4200552..4202072(+) (comM) [Tatumella citrea strain DSM 13699]
MSLARVMTRASIGIDAPLVTIEAHLSSGLPGLTLVGLPETAVKEARERVRSAMINSGFSFPARRITVNLAPADMPKEGGR
YDLPIAIAILAASEQIPASSLIRLEFLGELALNGALRPVRGTIPAVLAALGDQRTMILSRANEAEAGLITQGPCYVGETL
LDICHFLHGKSELPKAENNLPAPCRQHPDLQDIIGQQHARRALEITAAGGHNLLLIGPPGTGKTMLATRLPGILPPLSRD
EALECTALLSLSRDTPPASLCSDRPFRAPHHSSSMFALVGGGALPLPGEISLAHNGVLFLDELPEFQRRSLDSLREPLES
GVIAISRAKAKITYPARFQLIAAMNPAASGHYEGIHQRQTLSQLLRYLNRLSGPFLDRFDLSLEVPLLPPGTLAQQTLSA
ESSARVRGRVIEARELQQQRAGKVNALMDNKEVRKFCQLRVEDAQWLEQALLALGLSVRAWQRILKVSRTLADLQQQPDI
SRQHLQEALSYRAMDRLLQRLHKQQS

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=181147 A7K98_RS19890 WP_087490099.1 4200552..4202072(+) (comM) [Tatumella citrea strain DSM 13699]
ATGTCATTAGCCAGAGTAATGACCCGGGCAAGCATTGGCATTGACGCCCCACTGGTGACCATCGAAGCCCATCTGAGTAG
CGGATTGCCCGGGTTAACTTTAGTTGGTCTTCCGGAAACGGCAGTCAAAGAAGCCAGGGAGCGGGTACGTAGTGCCATGA
TTAACAGCGGGTTTAGCTTTCCTGCCAGACGTATTACTGTCAATCTTGCTCCGGCGGATATGCCCAAAGAAGGGGGGCGC
TATGACTTACCCATTGCTATTGCGATTCTGGCAGCTTCTGAGCAGATTCCGGCATCATCCCTTATCCGGCTAGAGTTTCT
GGGAGAACTGGCACTGAATGGCGCTCTGAGGCCGGTCAGAGGAACTATTCCAGCAGTACTGGCCGCGCTGGGTGACCAGC
GGACCATGATTCTTTCGCGGGCTAATGAGGCAGAAGCAGGGTTGATTACACAAGGGCCCTGTTATGTTGGTGAGACCTTG
CTCGATATCTGCCACTTTCTGCACGGCAAGAGTGAGCTTCCAAAGGCTGAAAATAACCTGCCTGCTCCTTGTCGTCAGCA
TCCTGACCTGCAGGATATTATTGGTCAGCAACATGCCAGGCGAGCGCTGGAGATCACGGCTGCAGGTGGCCACAATCTGC
TGCTGATCGGCCCACCAGGGACCGGAAAAACGATGCTGGCAACCAGACTACCAGGCATTCTTCCACCACTTAGTCGTGAT
GAAGCCCTTGAATGCACCGCTCTGCTGAGCCTGAGCAGAGATACTCCTCCTGCATCGCTTTGCTCAGACCGCCCTTTTCG
CGCTCCACATCATAGTTCATCGATGTTTGCTCTGGTCGGAGGGGGTGCATTACCCCTGCCGGGAGAGATCTCGCTCGCAC
ACAACGGAGTATTGTTTCTTGATGAGCTACCGGAATTTCAACGCAGATCACTCGACTCACTGAGAGAGCCTCTGGAATCA
GGCGTCATCGCCATTTCCCGGGCAAAAGCAAAAATCACCTACCCGGCAAGATTTCAGCTGATAGCGGCAATGAACCCTGC
CGCATCGGGACATTACGAGGGTATTCATCAACGTCAGACTCTCAGCCAGCTATTACGCTATCTGAATCGCCTCTCAGGGC
CTTTTCTCGACAGGTTTGACCTCTCCCTTGAGGTTCCCCTGTTACCCCCGGGAACTCTGGCTCAGCAAACCCTGAGTGCA
GAGTCATCAGCCCGGGTCCGCGGCAGGGTTATTGAGGCACGGGAGTTGCAGCAGCAAAGAGCAGGAAAAGTAAATGCGTT
GATGGATAACAAAGAGGTCAGAAAATTCTGTCAGCTTCGTGTTGAAGATGCGCAATGGCTTGAACAGGCATTACTGGCAC
TCGGGCTTTCCGTCAGAGCATGGCAGCGTATTTTAAAAGTTTCCAGGACTCTGGCAGATCTTCAGCAACAACCGGATATT
TCCCGGCAGCACCTGCAGGAAGCCCTGAGTTACCGGGCAATGGACAGGTTACTACAACGCCTGCATAAACAGCAGTCATG
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-388)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Y0LP47

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

60.672

100

0.607
  comM Glaesserella parasuis strain SC1401

60.196

100

0.607
  comM Vibrio cholerae strain A1552

57.51

100

0.575
  comM Vibrio campbellii strain DS40M4

57.03

99.802

0.569
  comM Legionella pneumophila str. Paris

48.362

100

0.496
  comM Legionella pneumophila strain ERS1305867

48.362

100

0.496
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.836

100

0.443

Multiple sequence alignment